RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 EME1Q96AY2 570 aa18■□□□□ 0.47
VIM-206ENST00000487938 SLC39A13Q96H72 371 aa18■□□□□ 0.47
VIM-206ENST00000487938 PRDM5Q9NQX1 630 aaPredicted RBP18■□□□□ 0.47
VIM-206ENST00000487938 LRRC14BA6NHZ5 514 aa18■□□□□ 0.47
VIM-206ENST00000487938 MRASO14807 208 aa18■□□□□ 0.47
VIM-206ENST00000487938 SLC7A4O43246 635 aa18■□□□□ 0.47
VIM-206ENST00000487938 FGFR3P22607 806 aa18■□□□□ 0.47
VIM-206ENST00000487938 ZNF157P51786 506 aaPredicted RBP18■□□□□ 0.47
VIM-206ENST00000487938 NDST2P52849 883 aa18■□□□□ 0.47
VIM-206ENST00000487938 RBBP5Q15291 538 aaKnown RBP18■□□□□ 0.47
VIM-206ENST00000487938 MAPRE2Q15555 327 aa18■□□□□ 0.47
VIM-206ENST00000487938 C11orf91Q3C1V1 193 aa18■□□□□ 0.47
VIM-206ENST00000487938 UNC50Q53HI1 259 aa18■□□□□ 0.47
VIM-206ENST00000487938 MON1AQ86VX9 555 aa18■□□□□ 0.47
VIM-206ENST00000487938 GABPB2Q8TAK5 448 aaPredicted RBP18■□□□□ 0.47
VIM-206ENST00000487938 COQ10BQ9H8M1 238 aa18■□□□□ 0.47
VIM-206ENST00000487938 RGS18Q9NS28 235 aa18■□□□□ 0.47
VIM-206ENST00000487938 GMIPQ9P107 970 aa18■□□□□ 0.47
VIM-206ENST00000487938 PTGDR2Q9Y5Y4 395 aa18■□□□□ 0.47
VIM-206ENST00000487938 ARL5AQ9Y689 179 aa18■□□□□ 0.47
VIM-206ENST00000487938 A0A1B0GVG6 124 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 MANSC4A6NHS7 340 aaPredicted RBP17.99■□□□□ 0.47
VIM-206ENST00000487938 TRIM24O15164 1050 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 KPNA6O60684 536 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 PIRTP0C851 137 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 RHOQP17081 205 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 NRG1Q02297 640 aaPredicted RBP17.99■□□□□ 0.47
VIM-206ENST00000487938 SLC5A9Q2M3M2 681 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 RAP1GAP2Q684P5 730 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 C17orf99Q6UX52 265 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 LARP4Q71RC2 724 aaKnown RBP eCLIP17.99■□□□□ 0.47
VIM-206ENST00000487938 MIB1Q86YT6 1006 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 RASAL3Q86YV0 1011 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 NUP93Q8N1F7 819 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 PRICKLE1Q96MT3 831 aaPredicted RBP17.99■□□□□ 0.47
VIM-206ENST00000487938 PRPF18Q99633 342 aaKnown RBP17.99■□□□□ 0.47
VIM-206ENST00000487938 MFSD1Q9H3U5 465 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 VPS45Q9NRW7 570 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 SUCOQ9UBS9 1254 aaKnown RBP17.99■□□□□ 0.47
VIM-206ENST00000487938 GIMAP2Q9UG22 337 aa17.99■□□□□ 0.47
VIM-206ENST00000487938 LDB2O43679 373 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 NRP2O60462 931 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 PAPSS2O95340 614 aaPredicted RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 SIX3O95343 332 aaPredicted RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 ZNF26P17031 533 aaPredicted RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 AP1ARQ63HQ0 302 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 ZNF549Q6P9A3 640 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 METTL25Q8N6Q8 603 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 ARRDC2Q8TBH0 407 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 BLOC1S5Q8TDH9 187 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 SLCO4A1Q96BD0 722 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 LRCH3Q96II8 777 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 SPAG4Q9NPE6 437 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 TMEM248Q9NWD8 314 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 CROTQ9UKG9 612 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 COMMD3-BMI1R4GMX3 469 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 MYO16Q9Y6X6 1858 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 C7orf72A4D263 438 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 SOAT2O75908 522 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 WISP3O95389 354 aaPredicted RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 IGHA2P01877 340 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 CAPNS1P04632 268 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 ALDOCP09972 364 aaKnown RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 TYMPP19971 482 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 CTGFP29279 349 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 RPL5P46777 297 aaKnown RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 INHBCP55103 352 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 SH3BP2P78314 561 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 FBXL22Q6P050 247 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 RBM44Q6ZP01 1051 aaKnown RBP17.98■□□□□ 0.47
VIM-206ENST00000487938 AMIGO2Q86SJ2 522 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 FUNDC1Q8IVP5 155 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 TTC9BQ8N6N2 239 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 GRIP2Q9C0E4 1043 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 IL1RL2Q9HB29 575 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 SCML2Q9UQR0 700 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 SNX13Q9Y5W8 968 aa17.98■□□□□ 0.47
VIM-206ENST00000487938 SMIM31A0A1B0GVY4 71 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 GOT2P00505 430 aaKnown RBP17.97■□□□□ 0.47
VIM-206ENST00000487938 FAM58BPP0C7Q3 252 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 ATXN1LP0C7T5 689 aaKnown RBP17.97■□□□□ 0.47
VIM-206ENST00000487938 SLC2A3P11169 496 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 PSMD8P48556 350 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 RHDQ02161 417 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SEMA3AQ14563 771 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.97■□□□□ 0.47
VIM-206ENST00000487938 NADK2Q4G0N4 442 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 HERC6Q8IVU3 1022 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SOCS4Q8WXH5 440 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 C19orf60Q96EN9 201 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 DNAJC1Q96KC8 554 aaKnown RBP17.97■□□□□ 0.47
VIM-206ENST00000487938 SEMA3CQ99985 751 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 AKTIPQ9H8T0 292 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 VCX3AQ9NNX9 186 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 CD300AQ9UGN4 299 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SARDHQ9UL12 918 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 PCDHB8Q9UN66 801 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SLC4A7Q9Y6M7 1214 aa17.97■□□□□ 0.47
VIM-206ENST00000487938 SCN10AQ9Y5Y9 1956 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms