RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 SCRIBQ14160 1630 aa4.3□□□□□ -1.72
VPS13D-207ENST00000476169 FAM90A8PA6NJQ4 464 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 C17orf100A8MU93 164 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 PSMD14O00487 310 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 PAPSS1O43252 624 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 TXNL1O43396 289 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 FOXD2O60548 495 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 SEC22BO75396 215 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 GCATO75600 419 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 CNTN5O94779 1100 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 MT-CO3P00414 261 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 TPM2P07951 284 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 FAM90A13PP0C7W8 464 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 FAM90A24PP0C7X0 464 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 MMP9P14780 707 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 TRIM21P19474 475 aaKnown RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 SFPQP23246 707 aaKnown RBP eCLIP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 HOXC8P31273 242 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 CDAP32320 146 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 HSPA4P34932 840 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 GABRB2P47870 512 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 BLKP51451 505 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 HMGN5P82970 282 aaKnown RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 OLIG2Q13516 323 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 KCNC3Q14003 757 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 HIST2H2ACQ16777 129 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 GLE1Q53GS7 698 aaKnown RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 MIIPQ5JXC2 388 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 ARMC4Q5T2S8 1044 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 FNDC7Q5VTL7 733 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 WDR73Q6P4I2 378 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 VSTM1Q6UX27 236 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 RBPMS2Q6ZRY4 209 aaKnown RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 RASAL3Q86YV0 1011 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 SPATA20Q8TB22 786 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 LPGAT1Q92604 370 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 SGCDQ92629 289 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 C16orf45Q96MC5 204 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 DACH2Q96NX9 599 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 IWS1Q96ST2 819 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 ATP6V0BQ99437 205 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 ANP32EQ9BTT0 268 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 C1orf21Q9H246 121 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 IL1RAPL2Q9NP60 686 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 ASIC5Q9NY37 505 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 SEMA5BQ9P283 1151 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 ABI3Q9P2A4 366 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 PLAGL1Q9UM63 463 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 CMAHPQ9Y471 501 aa4.29□□□□□ -1.72
VPS13D-207ENST00000476169 HEMK1Q9Y5R4 338 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 SIRT4Q9Y6E7 314 aaPredicted RBP4.29□□□□□ -1.72
VPS13D-207ENST00000476169 SALL3Q9BXA9 1300 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 LOC102723996A0A087X1L8 192 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 EDDM13A0A1B0GTR0 161 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 SYCE3A1L190 88 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 DNM1LO00429 736 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 CAPN9O14815 690 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 HCRTR2O43614 444 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 REC8O95072 547 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TRUB2O95900 331 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 HEXAP06865 529 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 ADH4P08319 380 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 PDGFRAP16234 1089 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TNFRSF1AP19438 455 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 MAKP20794 623 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TGM2P21980 687 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 HOXA13P31271 388 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 ADRA1BP35368 520 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 CLCN3P51790 818 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 YBEYP58557 167 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TFAP4Q01664 338 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 EFEMP1Q12805 493 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 FOXI1Q12951 378 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TUBB2AQ13885 445 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 DRAP1Q14919 205 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 LARS2Q15031 903 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 SNAPC1Q16533 368 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TYSND1Q2T9J0 566 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 ZRANB3Q5FWF4 1079 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TXNDC8Q6A555 127 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 AADACL2Q6P093 401 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TRIM72Q6ZMU5 477 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 MFN1Q8IWA4 741 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 DHX40Q8IX18 779 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 N4BP2L2Q92802 583 aaPredicted RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 HES6Q96HZ4 224 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 CCDC17Q96LX7 622 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 ADAD1Q96M93 576 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 ZNF558Q96NG5 402 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 OR2A14Q96R47 310 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 SIN3AQ96ST3 1273 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 CDRT15Q96T59 188 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 FAM118BQ9BPY3 351 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 TUBB2BQ9BVA1 445 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 UTP14AQ9BVJ6 771 aaKnown RBP4.28□□□□□ -1.72
VPS13D-207ENST00000476169 C1QTNF1Q9BXJ1 281 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 PCED1AQ9H1Q7 454 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 ABCG8Q9H221 673 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 GOLPH3LQ9H4A5 285 aa4.28□□□□□ -1.72
VPS13D-207ENST00000476169 PDZD7Q9H5P4 517 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms