RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 CR2P20023 1033 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 TRIM23P36406 574 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 SPIDRQ14159 915 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 TCEA2Q15560 299 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 BBS5Q8N3I7 341 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 OR56A4Q8NGH8 313 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 OR1E3Q8WZA6 343 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 PDXPQ96GD0 296 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 NUDCD1Q96RS6 583 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 THAP2Q9H0W7 228 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 CBX8Q9HC52 389 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 SIRPGQ9P1W8 387 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 B4GALT6Q9UBX8 382 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 IP6K2Q9UHH9 426 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 PCDHGA8Q9Y5G5 932 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 PTPRQQ9UMZ3 2332 aa16.63■□□□□ 0.25
CCDC28B-204ENST00000469003 TTC24A2A3L6 582 aaPredicted RBP16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 TMEM202A6NGA9 273 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 TNFRSF10CO14798 259 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 CASC3O15234 703 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 MAFKO60675 156 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 SERPING1P05155 500 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 KELP23276 732 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 RBMS1P29558 406 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 SERPINB6P35237 376 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 PDX1P52945 283 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 ZBED6P86452 979 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 SLC25A11Q02978 314 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 ACOX1Q15067 660 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 KCTD16Q68DU8 428 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 TXNRD3NBQ6F5E7 133 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 GPR155Q7Z3F1 870 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 LUZP1Q86V48 1076 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 PGBD5Q8N414 524 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 ATPAF2Q8N5M1 289 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 OR6C4Q8NGE1 309 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 CCDC74AQ96AQ1 378 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 IQCDQ96DY2 449 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 PRR11Q96HE9 360 aaPredicted RBP16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 NAF1Q96HR8 494 aaKnown RBP16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 BTBD6Q96KE9 485 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 COQ10AQ96MF6 247 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 SLC46A1Q96NT5 459 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 MGME1Q9BQP7 344 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 PCDH18Q9HCL0 1135 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 FGF22Q9HCT0 170 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 ANAPC7Q9UJX3 599 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 PCDHGC4Q9Y5F7 938 aa16.62■□□□□ 0.25
CCDC28B-204ENST00000469003 ZNF462Q96JM2 2506 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 SYCE3A1L190 88 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 A8MX80 341 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 CPP00450 1065 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 CYP1A2P05177 515 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 NFKBIAP25963 317 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 VIPR1P32241 457 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 UBASH3AP57075 661 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 RALGPS1Q5JS13 557 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 BROXQ5VW32 411 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 PNCKQ6P2M8 343 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 GPR156Q8NFN8 814 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 WDR36Q8NI36 951 aaKnown RBP16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 PDCD6IPQ8WUM4 868 aaKnown RBP16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 NSMCE1Q8WV22 266 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 KCNE4Q8WWG9 221 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 SLC39A7Q92504 469 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 NUP85Q9BW27 656 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 WDR26Q9H7D7 661 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 SYNDIG1Q9H7V2 258 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 NOD2Q9HC29 1040 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 KCTD5Q9NXV2 234 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 RABGEF1Q9UJ41 708 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 CAPN11Q9UMQ6 739 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 PHTF1Q9UMS5 762 aa16.61■□□□□ 0.25
CCDC28B-204ENST00000469003 KIF26BQ2KJY2 2108 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 A0A087X0T9 212 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 CCDC187A0A096LP49 1063 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 TEX51A0A1B0GUA7 166 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 TK2O00142 265 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 ATXN7O15265 892 aaPredicted RBP16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 HEXIM1O94992 359 aaKnown RBP16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 FAM228BP0C875 321 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 CYP2A6P11509 494 aaPredicted RBP16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 MLLT3P42568 568 aaPredicted RBP16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 MMP13P45452 471 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 UCNP55089 124 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 CDH6P55285 790 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 CXADRP78310 365 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 CNGA3Q16281 694 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 MARC1Q5VT66 337 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 OGFOD3Q6PK18 319 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 TAF8Q7Z7C8 310 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 LRRC49Q8IUZ0 686 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 PELI3Q8N2H9 469 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 CPLX3Q8WVH0 158 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 NUS1Q96E22 293 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 LGR4Q9BXB1 951 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 DPH1Q9BZG8 443 aa16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 MRPL40Q9NQ50 206 aaKnown RBP16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 RCOR3Q9P2K3 495 aaPredicted RBP16.6■□□□□ 0.25
CCDC28B-204ENST00000469003 CFAP46Q8IYW2 2715 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms