RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.16■□□□□ 0.18
COL7A1-204ENST00000462475 B4GALT6Q9UBX8 382 aa16.16■□□□□ 0.18
COL7A1-204ENST00000462475 ATXN7L1Q9ULK2 861 aaPredicted RBP16.16■□□□□ 0.18
COL7A1-204ENST00000462475 PCDHGA7Q9Y5G6 932 aa16.16■□□□□ 0.18
COL7A1-204ENST00000462475 TTC24A2A3L6 582 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-204ENST00000462475 CAPN8A6NHC0 703 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 LRRC53A6NM62 1247 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 B4DGG1 531 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 TMX2-CTNND1H3BSU7 103 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 AGRPO00253 132 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 PRPSAP2O60256 369 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 SCNN1BP51168 640 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 IL10RBQ08334 325 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 DPYSQ14117 519 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 RFTN1Q14699 578 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-204ENST00000462475 CERCAMQ5T4B2 595 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 E4F1Q66K89 784 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-204ENST00000462475 OGFOD3Q6PK18 319 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 JAMLQ86YT9 394 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 OR6C4Q8NGE1 309 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 TMEM74Q96NL1 305 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 PSKH2Q96QS6 385 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 CCNL2Q96S94 520 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-204ENST00000462475 WDR26Q9H7D7 661 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 CWC15Q9P013 229 aaKnown RBP16.15■□□□□ 0.18
COL7A1-204ENST00000462475 PISDQ9UG56 409 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 APPL1Q9UKG1 709 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 LOXL2Q9Y4K0 774 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 RNF215Q9Y6U7 377 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 ANKRD36A6QL64 1941 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 PIEZO2Q9H5I5 2752 aa16.15■□□□□ 0.18
COL7A1-204ENST00000462475 COL6A6A6NMZ7 2263 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 EFSO43281 561 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 LRCH4O75427 683 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 HOXC4P09017 264 aaPredicted RBP16.14■□□□□ 0.17
COL7A1-204ENST00000462475 KRT10P13645 584 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 GLB1P16278 677 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 KELP23276 732 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 TRIM23P36406 574 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 AP1S1P61966 158 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 NSUN2Q08J23 767 aaKnown RBP eCLIP16.14■□□□□ 0.17
COL7A1-204ENST00000462475 SLC10A7Q0GE19 358 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 SRSF6Q13247 344 aaKnown RBP16.14■□□□□ 0.17
COL7A1-204ENST00000462475 HLTFQ14527 1009 aaKnown RBP eCLIP16.14■□□□□ 0.17
COL7A1-204ENST00000462475 LBRQ14739 615 aaKnown RBP16.14■□□□□ 0.17
COL7A1-204ENST00000462475 ACOX1Q15067 660 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 TGIF1Q15583 401 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 C14orf28Q4W4Y0 310 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 TMCO4Q5TGY1 634 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 PPP1R2P3Q6NXS1 205 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 TMPRSS9Q7Z410 1059 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 SPRED1Q7Z699 444 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 CYP4F12Q9HCS2 524 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 SEPT3Q9UH03 358 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 MOSPD1Q9UJG1 213 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 MYO6Q9UM54 1294 aa16.14■□□□□ 0.17
COL7A1-204ENST00000462475 PRSS38A1L453 326 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 J3QKU1 62 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 TNFRSF10CO14798 259 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 RNF8O76064 485 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 JMJD7P0C870 316 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 ITIH1P19827 911 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 POLR2LP62875 67 aaKnown RBP16.13■□□□□ 0.17
COL7A1-204ENST00000462475 ZFP36L1Q07352 338 aaKnown RBP16.13■□□□□ 0.17
COL7A1-204ENST00000462475 CNGA3Q16281 694 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 ASIC2Q16515 512 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 SPECC1LQ69YQ0 1117 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 PNCKQ6P2M8 343 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 ZNF571Q7Z3V5 609 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-204ENST00000462475 PSTKQ8IV42 348 aaKnown RBP16.13■□□□□ 0.17
COL7A1-204ENST00000462475 FNIP1Q8TF40 1166 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 NUS1Q96E22 293 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 COQ10AQ96MF6 247 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 DPEP2Q9H4A9 486 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 HAUS4Q9H6D7 363 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 SUDS3Q9H7L9 328 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-204ENST00000462475 ETNK2Q9NVF9 386 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 LRIT1Q9P2V4 623 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 CNOT8Q9UFF9 292 aaKnown RBP16.13■□□□□ 0.17
COL7A1-204ENST00000462475 ACSL6Q9UKU0 697 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 PCDHGC4Q9Y5F7 938 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 AHCTF1Q8WYP5 2266 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 BSNQ9UPA5 3926 aa16.13■□□□□ 0.17
COL7A1-204ENST00000462475 DDX3XO00571 662 aaKnown RBP eCLIP16.12■□□□□ 0.17
COL7A1-204ENST00000462475 HTRA2O43464 458 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-204ENST00000462475 PEX11BO96011 259 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 FTLP02792 175 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-204ENST00000462475 MYCLP1P12525 358 aaPredicted RBP16.12■□□□□ 0.17
COL7A1-204ENST00000462475 TCF4P15884 667 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 PNLIPP16233 465 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 CR2P20023 1033 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 IL1R2P27930 398 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 ETV5P41161 510 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 HCAR3P49019 387 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 RENBPP51606 427 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 ZNF235Q14590 738 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 SMTNL2Q2TAL5 461 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 SLITRK4Q8IW52 837 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 PGBD5Q8N414 524 aa16.12■□□□□ 0.17
COL7A1-204ENST00000462475 PTCD2Q8WV60 388 aaKnown RBP16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms