RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 PRLP01236 227 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 MMP2P08253 660 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 C1SP09871 688 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 ALPIP09923 528 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 C1QTNF9P0C862 333 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 CYP2A6P11509 494 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 CKMT2P17540 419 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 LHCGRP22888 699 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 HNF1BP35680 557 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 NR2C2P49116 596 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 ACADVLP49748 655 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 VAV2P52735 878 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 IFI35P80217 286 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 ZBTB17Q13105 803 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 MTM1Q13496 603 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 TFDP2Q14188 446 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 FAXCQ5TGI0 409 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 KAZNQ674X7 775 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 DENND2CQ68D51 928 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 DHRS13Q6UX07 377 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 MACC1Q6ZN28 852 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 NYAP1Q6ZVC0 841 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 TMPRSS7Q7RTY8 843 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 TSPAN33Q86UF1 283 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 PHACTR4Q8IZ21 702 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 RBFAQ8N0V3 343 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 PELI3Q8N2H9 469 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 ZNF548Q8NEK5 533 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 BTN2A2Q8WVV5 523 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 KRT35Q92764 455 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 GATA6Q92908 595 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 TSACCQ96A04 125 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 MCCC1Q96RQ3 725 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 TMEM121BQ9BXQ6 578 aaPredicted RBP12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 CEP41Q9BYV8 373 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 HAUS2Q9NVX0 235 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 CHKBQ9Y259 395 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 PCDHGA1Q9Y5H4 931 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 CSNK1G3Q9Y6M4 447 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 MYLKQ15746 1914 aa12.77□□□□□ -0.37
PRPF40A-203ENST00000448428 hCG_1818297A0A087WSY0 165 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 K7ESM1 405 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 PPP1R12AO14974 1030 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 AQP9O43315 295 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 GCATO75600 419 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 PECAM1P16284 738 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 ACP1P24666 158 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 NFKBIAP25963 317 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 TRIM23P36406 574 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 CD86P42081 329 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 NAP1L1P55209 391 aaKnown RBP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 PPARDQ03181 441 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 C1orf61Q13536 156 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 NFATC4Q14934 902 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 HS1BP3Q53T59 392 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 TFDP3Q5H9I0 405 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 PNCKQ6P2M8 343 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 ENPP7Q6UWV6 458 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 UNQ6494/PRO21346Q6UXR6 183 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 CCNI2Q6ZMN8 369 aaPredicted RBP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 USP45Q70EL2 814 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 HSD11B1LQ7Z5J1 315 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 MARCH9Q86YJ5 346 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 EXD1Q8NHP7 514 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 LMX1AQ8TE12 382 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 FUBP1Q96AE4 644 aaKnown RBP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 CALR3Q96L12 384 aaKnown RBP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 APOLD1Q96LR9 279 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 TDRD1Q9BXT4 1180 aaKnown RBP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 SLC13A1Q9BZW2 595 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 BRD8Q9H0E9 1235 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 NLGN3Q9NZ94 848 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 SEPT10Q9P0V9 454 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 SPASTQ9UBP0 616 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 PCDHA3Q9Y5H8 950 aa12.76□□□□□ -0.37
PRPF40A-203ENST00000448428 A0A0J9YYE9 177 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 A0A0U1RQJ8 604 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 RFPL3O75679 317 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 TRBC1P01850 177 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 ALPPL2P10696 532 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 MYF5P13349 255 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 TGM2P21980 687 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 HTR1BP28222 390 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 CTNNA1P35221 906 aaKnown RBP12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 ETV3P41162 512 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 HK3P52790 923 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 SRP54P61011 504 aaKnown RBP12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 SKOR1P84550 965 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 PTSQ03393 145 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 ARHGEF7Q14155 803 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 PRKD1Q15139 912 aaPredicted RBP12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 SMAD1Q15797 465 aaKnown RBP12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 ALG11Q2TAA5 492 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 PRRT3Q5FWE3 981 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 KCTD16Q68DU8 428 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 ESRP1Q6NXG1 681 aaKnown RBP12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 CRTC1Q6UUV9 634 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 RFLNAQ6ZTI6 216 aa12.75□□□□□ -0.37
PRPF40A-203ENST00000448428 Q6ZVL8 140 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms