RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 HMGCLL1Q8TB92 370 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 CASP10Q92851 521 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 KHSRPQ92945 711 aaKnown RBP eCLIP8.6□□□□□ -1.03
HPS4-206ENST00000439453 MAELQ96JY0 434 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 TSNARE1Q96NA8 513 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 TDRD1Q9BXT4 1180 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 PBX4Q9BYU1 374 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 RNF19AQ9NV58 838 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 TMEM9Q9P0T7 183 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 SEPT10Q9P0V9 454 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 TSPAN16Q9UKR8 245 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 SLC39A10Q9ULF5 831 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 AP4E1Q9UPM8 1137 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 AKT3Q9Y243 479 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 TSC22D4Q9Y3Q8 395 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 CITO14578 2027 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 C5orf42Q9H799 3197 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 VCANP13611 3396 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 TRPC5OSA6NMA1 111 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 CNOT3O75175 753 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 PRKCBP05771 671 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 GRIA3P42263 894 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 ATXN1P54253 815 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 ZBTB17Q13105 803 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 EPHX4Q8IUS5 362 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 ZC3H7AQ8IWR0 971 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 ANKRD52Q8NB46 1076 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 NETO2Q8NC67 525 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 OR52K1Q8NGK4 314 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 OR2T34Q8NGX1 318 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 OR2T3Q8NH03 318 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 CXorf38Q8TB03 319 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 CYGBQ8WWM9 190 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 CCDC97Q96F63 343 aaPredicted RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 VPS39Q96JC1 886 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 C1QTNF1Q9BXJ1 281 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 DNAI2Q9GZS0 605 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 MUC3BQ9H195 1237 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 GIN1Q9NXP7 522 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 NCKIPSDQ9NZQ3 722 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 TLK1Q9UKI8 766 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 B3GNT3Q9Y2A9 372 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 ANKRD6Q9Y2G4 727 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 GAS2O43903 313 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 CCNA2P20248 432 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 MAP4P27816 1152 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 SLC6A3Q01959 620 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 GNA12Q03113 381 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 MBTD1Q05BQ5 628 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 FASTKQ14296 549 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 NEDD8Q15843 81 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 MAP7D1Q3KQU3 841 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 AGKQ53H12 422 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 GALNT18Q6P9A2 607 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 LCLAT1Q6UWP7 414 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 LAYNQ6UX15 382 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 CCNYL1Q8N7R7 359 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 C1orf127Q8N9H9 656 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 P2RY11Q96G91 374 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 NFKBIZQ9BYH8 718 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 TTYH1Q9H313 450 aaPredicted RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 TMEM181Q9P2C4 612 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 ST3GAL5Q9UNP4 418 aa8.6□□□□□ -1.03
HPS4-206ENST00000439453 RUVBL2Q9Y230 463 aaKnown RBP8.6□□□□□ -1.03
HPS4-206ENST00000439453 ZCWPW2A0A1B0GU75 182 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 ABHD14A-ACY1A0A1B0GW23 586 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 LCHNA4D1U4 455 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 ENPP3O14638 875 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 NRP1O14786 923 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 CLOCKO15516 846 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 DLX3O60479 287 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 SRP72O76094 671 aaKnown RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 CLIC3O95833 236 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 ATP6V1B2P21281 511 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 SAT1P21673 171 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 HOXA11P31270 313 aaPredicted RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 GRM5P41594 1212 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 PGGT1BP53609 377 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 RABGGTBP53611 331 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 CSE1LP55060 971 aaKnown RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 HTRA4P83105 476 aaPredicted RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 SMAD3P84022 425 aaKnown RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 GRSF1Q12849 480 aaKnown RBP eCLIP8.59□□□□□ -1.03
HPS4-206ENST00000439453 TRIM16LQ309B1 348 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 FAM117BQ6P1L5 589 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 ABRAXAS1Q6UWZ7 409 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 COLGALT2Q8IYK4 626 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 STYXQ8WUJ0 223 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 FBXL20Q96IG2 436 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 C1orf50Q9BV19 199 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 FTHL17Q9BXU8 183 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 EIF2AQ9BY44 585 aaKnown RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 VRTNQ9H8Y1 702 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 CYP3A43Q9HB55 503 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 ATAD3AQ9NVI7 634 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 RIC8BQ9NVN3 520 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 HACD3Q9P035 362 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 GMPR2Q9P2T1 348 aaKnown RBP8.59□□□□□ -1.03
HPS4-206ENST00000439453 CROTQ9UKG9 612 aa8.59□□□□□ -1.03
HPS4-206ENST00000439453 C1orf232A0A0U1RR37 186 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms