RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 NDUFAF5Q5TEU4 345 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 SLC15A4Q8N697 577 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 FNIP1Q8TF40 1166 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 MYLPFQ96A32 169 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 SH3KBP1Q96B97 665 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 CDC42EP4Q9H3Q1 356 aaKnown RBP9.85□□□□□ -0.83
USP54-205ENST00000424265 ANAPC5Q9UJX4 755 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 ST14Q9Y5Y6 855 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 DENRO43583 198 aaKnown RBP9.85□□□□□ -0.83
USP54-205ENST00000424265 NOS2P35228 1153 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 CLDN10P78369 228 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 NPTX1Q15818 432 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 AGAP7PQ5VUJ5 663 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 PRR23BQ6ZRT6 265 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 ANKRD33Q7Z3H0 272 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 FAM35AQ86V20 835 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 FAM126BQ8IXS8 530 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 CADM3Q8N126 398 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 PHOSPHO2Q8TCD6 241 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 SCLYQ96I15 445 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 ZFP42Q96MM3 310 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 TMEM245Q9H330 911 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 TRIT1Q9H3H1 467 aaKnown RBP9.85□□□□□ -0.83
USP54-205ENST00000424265 ADPRHL2Q9NX46 363 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 KIF17Q9P2E2 1029 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 EBF1Q9UH73 591 aa9.85□□□□□ -0.83
USP54-205ENST00000424265 ZNF197O14709 1029 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 DYRK3O43781 588 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 RBL1P28749 1068 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 RECQLP46063 649 aaPredicted RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 HERC3Q15034 1050 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 DENND5BQ6ZUT9 1274 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 FKBP9P1Q75LS8 142 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 ADGRG6Q86SQ4 1221 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 PPWD1Q96BP3 646 aaKnown RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 KREMEN1Q96MU8 473 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 SPATA2Q9UM82 520 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 FARP1Q9Y4F1 1045 aaPredicted RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 MYOCOSA0A1B0GUC4 107 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 EEF2KO00418 725 aaKnown RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 E2F3O00716 465 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 LTFP02788 710 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 GSTM1P09488 218 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 COMTP21964 271 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 CXCR2P25025 360 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 ECHS1P30084 290 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 HTR2BP41595 481 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 TRAP1Q12931 704 aaKnown RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 PDK4Q16654 411 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 LDLRAP1Q5SW96 308 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 IRF2BP2Q7Z5L9 587 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 EFHBQ8N7U6 833 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 PDCD6IPQ8WUM4 868 aaKnown RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 SLC9A6Q92581 669 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 AKAP1Q92667 903 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP54-205ENST00000424265 TMA16Q96EY4 203 aaKnown RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 ZSWIM1Q9BR11 485 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 BCO2Q9BYV7 579 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 WDCPQ9H6R7 721 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 SLC28A3Q9HAS3 691 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 DDIT4Q9NX09 232 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 TIMM13Q9Y5L4 95 aaPredicted RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 PMF1-BGLAPU3KQ54 211 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 KAT6AQ92794 2004 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 M0QYT0 321 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 SULT1C4O75897 302 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 SNAP29O95721 258 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 GLUD1P00367 558 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 CCR1P32246 355 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 NUDT1P36639 197 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 CLCNKBP51801 687 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 NOMO3P69849 1222 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 POU6F2P78424 691 aaPredicted RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 ROR1Q01973 937 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 NANOGP8Q6NSW7 305 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 LEMD2Q8NC56 503 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 FANK1Q8TC84 345 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 ASB12Q8WXK4 309 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 TTYH3Q9C0H2 523 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 MCOLN1Q9GZU1 580 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 CXorf21Q9HAI6 301 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 SFMBT1Q9UHJ3 866 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 TBC1D30Q9Y2I9 924 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 ACAT1P24752 427 aaKnown RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 GSTM2P28161 218 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 FMO1Q01740 532 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 FSCBQ5H9T9 825 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 HEATR6Q6AI08 1181 aaKnown RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 OTOAQ7RTW8 1153 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 MICU2Q8IYU8 434 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 CRYBG2Q8N1P7 616 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 OR5H6Q8NGV6 325 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 SLA2Q9H6Q3 261 aa9.84□□□□□ -0.83
USP54-205ENST00000424265 TRIM45Q9H8W5 580 aaPredicted RBP9.84□□□□□ -0.83
USP54-205ENST00000424265 SLC9A3R1O14745 358 aaPredicted RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 RGS5O15539 181 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 SNRPAP09012 282 aaKnown RBP9.83□□□□□ -0.84
USP54-205ENST00000424265 ITKQ08881 620 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 ADIGQ0VDE8 80 aa9.83□□□□□ -0.84
USP54-205ENST00000424265 TYSND1Q2T9J0 566 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms