RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 IFT80Q9P2H3 777 aaPredicted RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 DPP7Q9UHL4 492 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 TRHDEQ9UKU6 1024 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 JCHAINP01591 159 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 MAGP20916 626 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 OR3A3P47888 321 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 OR3A2P47893 321 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 LHX1P48742 406 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 TUFMP49411 452 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 LYPLAL1Q5VWZ2 237 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 CD302Q8IX05 232 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 TMEM161BQ8NDZ6 487 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 SEMA3GQ9NS98 782 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 TBC1D14Q9P2M4 693 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 KCNK1O00180 336 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 CYP11B1P15538 503 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 PEX6Q13608 980 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 MTMR2Q13614 643 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF697Q5TEC3 545 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 TBC1D21Q8IYX1 336 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 BAP1Q92560 729 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 GIMAP5Q96F15 307 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 KLHL15Q96M94 604 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 RAB4AP20338 218 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 NAGLUP54802 743 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 CSTF1Q05048 431 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 SNAPC1Q16533 368 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 MAPK14Q16539 360 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 C1orf216Q8TAB5 229 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 STRBPQ96SI9 672 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 ZFP14Q9HCL3 533 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 C14orf166Q9Y224 244 aaKnown RBP13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 CLCA4Q14CN2 919 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 ADAM32Q8TC27 787 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 NXNL1Q96CM4 212 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF649Q9BS31 505 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 NUDT15Q9NV35 164 aa13.36□□□□□ -0.27
CCDC88A-204ENST00000413716 E2F3O00716 465 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 SERPINA4P29622 427 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 RNF43Q68DV7 783 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 USP43Q70EL4 1123 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 STAG3L4Q8TBR4 150 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 PANX1Q96RD7 426 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 SPATA7Q9P0W8 599 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 MYH14Q7Z406 1995 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 CSN2P05814 226 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 KLRC1P26715 233 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 AIMP2Q13155 320 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 NKX2-3Q8TAU0 364 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 SPG21Q9NZD8 308 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 GNG13Q9P2W3 67 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 CHD1O14646 1710 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 GNRH1P01148 92 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 URODP06132 367 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 COX4I1P13073 169 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 GNASQ5JWF2 1037 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 ARCQ7LC44 396 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 EFCAB3Q8N7B9 438 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 MUC13Q9H3R2 512 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 MROH8Q9H579 483 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 MTMR12Q9C0I1 747 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 IL22Q9GZX6 179 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 CNTRLQ7Z7A1 2325 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 HOXA2O43364 376 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 USP12O75317 370 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 TRMUO75648 421 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 ACO1P21399 889 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 ELP6Q0PNE2 266 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF782Q6ZMW2 699 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 C12orf50Q8NA57 414 aaPredicted RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 FXR1P51114 621 aaKnown RBP eCLIP13.35□□□□□ -0.273e-8■■■■□ 23.7
CCDC88A-204ENST00000413716 UBR7Q8N806 425 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 C12orf43Q96C57 262 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 ELAC1Q9H777 363 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 RBM22Q9NW64 420 aaKnown RBP eCLIP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 CLCA1A8K7I4 914 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 PI16Q6UXB8 463 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 NDNQ99608 321 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 SLC22A4Q9H015 551 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 TMEM51Q9NW97 253 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 KCNN3Q9UGI6 736 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 I3L521 148 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 PEPDP12955 493 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 NAMPTP43490 491 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 RORCP51449 518 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 FNDC3BQ53EP0 1204 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 GPR139Q6DWJ6 353 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 FIP1L1Q6UN15 594 aaKnown RBP13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 RIT1Q92963 219 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 OR52E6Q96RD3 313 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 C17orf75Q9HAS0 396 aa13.35□□□□□ -0.27
CCDC88A-204ENST00000413716 CYB561D2O14569 222 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 RP2O75695 350 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 PTENP60484 403 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ALG10BQ5I7T1 473 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 METTL21CQ5VZV1 264 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 RAP1GAP2Q684P5 730 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ZNF226Q9NYT6 803 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 AP4B1Q9Y6B7 739 aa13.34□□□□□ -0.27
CCDC88A-204ENST00000413716 ZBTB11O95625 1053 aaPredicted RBP13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms