RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 SKA2Q8WVK7 121 aaPredicted RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 VPS33AQ96AX1 596 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 HAPLN3Q96S86 360 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 SERPINI1Q99574 410 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 MRPL57Q9BQC6 102 aaKnown RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 TRAF6Q9Y4K3 522 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 KNL1Q8NG31 2342 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 A0A1B0GTW7 788 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 ALDH2P05091 517 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 SLC24A5Q71RS6 500 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 RNF180Q86T96 592 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 ZBTB46Q86UZ6 589 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 PGAP3Q96FM1 320 aaPredicted RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 PKP2Q99959 881 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 SLC25A51Q9H1U9 297 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 ATP13A1Q9HD20 1204 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 PCDHB7Q9Y5E2 793 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 MAGEA13PA6NCF6 341 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 TMEM88BA6NKF7 163 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 F5H5T6 163 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 VCLP18206 1134 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 PRDX3P30048 256 aaKnown RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 AIF1P55008 147 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 HTRA3P83110 453 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 CDK18Q07002 472 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 TSNQ15631 228 aaKnown RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 ATXN7L2Q5T6C5 722 aaPredicted RBP13.42□□□□□ -0.26
VPS54-203ENST00000409558 PAQR3Q6TCH7 311 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 IGSF5Q9NSI5 407 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 NEU3Q9UQ49 428 aa13.42□□□□□ -0.26
VPS54-203ENST00000409558 CDC7O00311 574 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 BTN3A1O00481 513 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 UBFD1O14562 309 aaKnown RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 CD3EAPO15446 510 aaKnown RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 ADAMTS4O75173 837 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 FKBP6O75344 327 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 NDUFS3O75489 264 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 SGSHP51688 502 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 SLC7A2P52569 658 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 PSME3P61289 254 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 YBX1P67809 324 aaKnown RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 PLD1Q13393 1074 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 C18orf21Q32NC0 220 aaPredicted RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 IL23RQ5VWK5 629 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 CARNMT1Q8N4J0 409 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 LINC01599Q8WXQ3 324 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 PRPF18Q99633 342 aaKnown RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 CIB1Q99828 191 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 TET1Q8NFU7 2136 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 SF3B1O75533 1304 aaKnown RBP eCLIP13.41□□□□□ -0.262e-21■■■■■ 124.1
VPS54-203ENST00000409558 F8W8V4 182 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 AKAP10O43572 662 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 NIPSNAP2O75323 286 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 TIPRLO75663 272 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 CKMT2P17540 419 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 ME2P23368 584 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 CRABP2P29373 138 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 RBBP7Q16576 425 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 PTPRNQ16849 979 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 MTX3Q5HYI7 312 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 C16orf89Q6UX73 402 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 GLT6D1Q7Z4J2 308 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 SATL1Q86VE3 508 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 CILP2Q8IUL8 1156 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 C2CD4AQ8NCU7 369 aaPredicted RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 KLHL32Q96NJ5 620 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 GPR78Q96P69 363 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 RTKNQ9BST9 563 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 ZBED2Q9BTP6 218 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 CINPQ9BW66 212 aaPredicted RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 APOL5Q9BWW9 433 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 MRASO14807 208 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 STX1BP61266 288 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 MSLNQ13421 630 aaPredicted RBP13.41□□□□□ -0.26
VPS54-203ENST00000409558 GRB7Q14451 532 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 FOXB2Q5VYV0 432 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 LRTOMTQ8WZ04 291 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 IRGQQ8WZA9 623 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 RNF112Q9ULX5 631 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 SPO11Q9Y5K1 396 aa13.41□□□□□ -0.26
VPS54-203ENST00000409558 NPEPPSL1A6NEC2 478 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 TMEM114B3SHH9 223 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 GRIA3P42263 894 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 RAB27AP51159 221 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 APLP1P51693 650 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 MGAT3Q09327 533 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 ARMC12Q5T9G4 340 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 FBXL19Q6PCT2 694 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 DNAJC14Q6Y2X3 702 aaPredicted RBP13.4□□□□□ -0.26
VPS54-203ENST00000409558 MYO1HQ8N1T3 1032 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 PQLC1Q8N2U9 271 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 LZTR1Q8N653 840 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 DCUN1D1Q96GG9 259 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 TLR8Q9NR97 1041 aaKnown RBP13.4□□□□□ -0.26
VPS54-203ENST00000409558 CIDEBQ9UHD4 219 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 IL1BP01584 269 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 SERPINF2P08697 491 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 MTTPP55157 894 aa13.4□□□□□ -0.26
VPS54-203ENST00000409558 HNRNPDQ14103 355 aaKnown RBP13.4□□□□□ -0.26
VPS54-203ENST00000409558 NFE2Q16621 373 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms