RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 GPATCH1Q9BRR8 931 aaKnown RBP16.43■□□□□ 0.22
SDC4-201ENST00000372733 AKTIPQ9H8T0 292 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 AGPAT4Q9NRZ5 378 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 NDFIP2Q9NV92 336 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 OAZ3Q9UMX2 235 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 IPPQ9Y573 584 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 FXYD1O00168 92 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 PTGESO14684 152 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 MAFKO60675 156 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 F9P00740 461 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 ACADVLP49748 655 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 SLC5A3P53794 718 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 MERTKQ12866 999 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 RAB41Q5JT25 222 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 GPR158Q5T848 1215 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 INTS11Q5TA45 600 aaKnown RBP16.43■□□□□ 0.22
SDC4-201ENST00000372733 HECTD2Q5U5R9 776 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 PATL1Q86TB9 770 aaKnown RBP16.43■□□□□ 0.22
SDC4-201ENST00000372733 CAMK1DQ8IU85 385 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 PCYOX1LQ8NBM8 494 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 PTCD2Q8WV60 388 aaKnown RBP16.43■□□□□ 0.22
SDC4-201ENST00000372733 ROPN1LQ96C74 230 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 SLC39A8Q9C0K1 460 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 KATNBL1Q9H079 304 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 MRM3Q9HC36 420 aaKnown RBP16.43■□□□□ 0.22
SDC4-201ENST00000372733 RBM22Q9NW64 420 aaKnown RBP eCLIP16.43■□□□□ 0.22
SDC4-201ENST00000372733 ZNHIT2Q9UHR6 403 aa16.43■□□□□ 0.22
SDC4-201ENST00000372733 RNF103-CHMP3A0A140T963 221 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 HHLA1C9JL84 531 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 BOLA2-SMG1P6H3BVE0 249 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 PPP6CO00743 305 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 RBP1P09455 135 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 SMPD1P17405 629 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 ZNF792Q3KQV3 632 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 IRAK1BP1Q5VVH5 260 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 TMEM207Q6UWW9 146 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 LYSMD3Q7Z3D4 306 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 SLC15A3Q8IY34 581 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 CMTR2Q8IYT2 770 aaKnown RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 SMYD1Q8NB12 490 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 DQX1Q8TE96 717 aaKnown RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 RPL10LQ96L21 214 aaKnown RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 SENP8Q96LD8 212 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 NPLQ9BXD5 320 aaPredicted RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 ENTPD7Q9NQZ7 604 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 TUBA8Q9NY65 449 aaPredicted RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 BRCA1P38398 1863 aaKnown RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 SOX11P35716 441 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 CLCN5P51795 746 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 CDKN2DP55273 166 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 INPP5AQ14642 412 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 ZNF678Q5SXM1 525 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 Q6ZNX1 250 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 CROCCP3Q8IVE0 287 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 PACRGLQ8N7B6 248 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 SMG8Q8ND04 991 aaKnown RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 OR6J1Q8NGC5 347 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 DNAJB3Q8WWF6 145 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 SOX17Q9H6I2 414 aaPredicted RBP16.42■□□□□ 0.22
SDC4-201ENST00000372733 CXorf21Q9HAI6 301 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 FAIMQ9NVQ4 179 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 CMTM6Q9NX76 183 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 ABCD2Q9UBJ2 740 aa16.42■□□□□ 0.22
SDC4-201ENST00000372733 LRRC14BA6NHZ5 514 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 CXCL11O14625 94 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ATP6V1G1O75348 118 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 IMPDH1P20839 514 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 PSMA4P25789 261 aaKnown RBP16.41■□□□□ 0.22
SDC4-201ENST00000372733 ATP4BP51164 291 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ATP6V0D1P61421 351 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 PMS2P3Q13401 168 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 GRB7Q14451 532 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 SNX17Q15036 470 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 UNC50Q53HI1 259 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 GPR107Q5VW38 600 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 RANBP10Q6VN20 620 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 KIAA0408Q6ZU52 694 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ANKRD23Q86SG2 305 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 SLC22A9Q8IVM8 553 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ADGRG5Q8IZF4 528 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ZUFSPQ96AP4 578 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 UBXN10Q96LJ8 280 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 HACD3Q9P035 362 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 CLEC11AQ9Y240 323 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 A0A1W2PPW3 197 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 MEIS3P2A8K0S8 358 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 H3BMQ9 156 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 EI24O14681 340 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 GIPC1O14908 333 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ARPC2O15144 300 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 MATN3O15232 486 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 CAPN15O75808 1086 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 FASP25445 335 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 VARSP26640 1264 aaKnown RBP16.41■□□□□ 0.22
SDC4-201ENST00000372733 IREB2P48200 963 aaKnown RBP16.41■□□□□ 0.22
SDC4-201ENST00000372733 ZNF135P52742 658 aaPredicted RBP16.41■□□□□ 0.22
SDC4-201ENST00000372733 WNT3AP56704 352 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ACAP2Q15057 778 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 ATP6AP1Q15904 470 aa16.41■□□□□ 0.22
SDC4-201ENST00000372733 UGT3A2Q3SY77 523 aa16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms