RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 ZMPSTE24O75844 475 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 POLBP06746 335 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 MMP2P08253 660 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 PGAM1P18669 254 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 CD70P32970 193 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 IRX1P78414 480 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 CRADDP78560 199 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 DSC2Q02487 901 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SLC12A1Q13621 1099 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 THOC5Q13769 683 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 TRMT5Q32P41 509 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 ASTLQ6HA08 431 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 RETSATQ6NUM9 610 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SCUBE1Q8IWY4 988 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 DCAF4L2Q8NA75 395 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SCG3Q8WXD2 468 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 IRF7Q92985 503 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 ASIC4Q96FT7 647 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 NSMCE3Q96MG7 304 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 FAM161BQ96MY7 647 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 PSKH2Q96QS6 385 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SEMA3CQ99985 751 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 BBS2Q9BXC9 721 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 C1orf21Q9H246 121 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 DCDC2Q9UHG0 476 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 BPTFQ12830 3046 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 UGT1A9O60656 530 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 GLRA3O75311 464 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SERPINF2P08697 491 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 CES1P23141 567 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 LTBRP36941 435 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 RGRP47804 291 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 WNT3AP56704 352 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SATB1Q01826 763 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 LMAN2Q12907 356 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 PCSK7Q16549 785 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 LRIT3Q3SXY7 679 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 LY6G5CQ5SRR4 150 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 TRMT10BQ6PF06 316 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 MARK2Q7KZI7 788 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 ADGRG2Q8IZP9 1017 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 KIAA1958Q8N8K9 716 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 ARRDC2Q8TBH0 407 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 ACDQ96AP0 544 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 LMLNQ96KR4 655 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 S1PR5Q9H228 398 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 UGT1A7Q9HAW7 530 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 UGT1A10Q9HAW8 530 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 UGT1A8Q9HAW9 530 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SPHK2Q9NRA0 654 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 SYBUQ9NX95 663 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 INTS6Q9UL03 887 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 COLQQ9Y215 455 aaPredicted RBP13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 MTCH2Q9Y6C9 303 aa13.23□□□□□ -0.29
SQSTM1-201ENST00000360718 NEDD8-MDP1E9PL57 170 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 TM7SF2O76062 418 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 ALDH1A2O94788 518 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 KLHL2O95198 593 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 PENKP01210 267 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 KITP10721 976 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 HOXB8P17481 243 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 FCARP24071 287 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 MXRA7P84157 204 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 INO80DQ53TQ3 878 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 STEAP4Q687X5 459 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 WDR60Q8WVS4 1066 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 ZFYVE19Q96K21 471 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 MRGPRX2Q96LB1 330 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 MGME1Q9BQP7 344 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 CCDC106Q9BWC9 280 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 GDE1Q9NZC3 331 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 SOX1O00570 391 aaPredicted RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 TRIM24O15164 1050 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 ATP9BO43861 1147 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 MT-CO1P00395 513 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 PDHA1P08559 390 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 HLA-FP30511 346 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 ADRA1AP35348 466 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 RCN2Q14257 317 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 FASTKD1Q53R41 847 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 CES5AQ6NT32 575 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 KDELC1Q6UW63 502 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 KDELC2Q7Z4H8 507 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 METTL3Q86U44 580 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 RBM15BQ8NDT2 890 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 PIWIL2Q8TC59 973 aaKnown RBP13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 SMARCD2Q92925 531 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 IFT43Q96FT9 208 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 EXOC2Q96KP1 924 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 VPS51Q9UID3 782 aa13.22□□□□□ -0.29
SQSTM1-201ENST00000360718 HMX2A2RU54 273 aa13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 SKAP2O75563 359 aaPredicted RBP13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 TPH1P17752 444 aa13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 CPA2P48052 419 aa13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 ALDH18A1P54886 795 aaKnown RBP13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 AP2B1P63010 937 aa13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 KDSRQ06136 332 aa13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 CYTH1Q15438 398 aa13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 INSCQ1MX18 579 aa13.21□□□□□ -0.29
SQSTM1-201ENST00000360718 SPANXN3Q5MJ09 141 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms