RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 ALDH1A1P00352 501 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 RBP1P09455 135 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 IL31Q6EBC2 164 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 CLEC6AQ6EIG7 209 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 ZNF549Q6P9A3 640 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 C16orf89Q6UX73 402 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 GK5Q6ZS86 529 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 ISCA2Q86U28 154 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 KBTBD6Q86V97 674 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 CEP70Q8NHQ1 597 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 CD99L2Q8TCZ2 262 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 PTERQ96BW5 349 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 STK39Q9UEW8 545 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 MKI67P46013 3256 aaKnown RBP19.41■□□□□ 0.7
COL9A3-201ENST00000343916 F5H5T6 163 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 UBFD1O14562 309 aaKnown RBP19.41■□□□□ 0.7
COL9A3-201ENST00000343916 UBTFL6P0CB48 400 aaPredicted RBP19.41■□□□□ 0.7
COL9A3-201ENST00000343916 RPL17P18621 184 aaKnown RBP19.41■□□□□ 0.7
COL9A3-201ENST00000343916 RING1Q06587 406 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 TNK2Q07912 1038 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 ADGRG6Q86SQ4 1221 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 SDCCAG8Q86SQ7 713 aaPredicted RBP19.41■□□□□ 0.7
COL9A3-201ENST00000343916 NSMCE3Q96MG7 304 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 PDFQ9HBH1 243 aa19.41■□□□□ 0.7
COL9A3-201ENST00000343916 CCDC162PA2VCL2 907 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 TRPA1O75762 1119 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 WISP3O95389 354 aaPredicted RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 GLP2RO95838 553 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 XRCC1P18887 633 aaPredicted RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 MAPKAPK2P49137 400 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 YBEYP58557 167 aaPredicted RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 RPS24P62847 133 aaKnown RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 TCTN1Q2MV58 587 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 SFT2D3Q587I9 215 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 FOXB2Q5VYV0 432 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 BNC2Q6ZN30 1099 aaPredicted RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 BCL7CQ8WUZ0 217 aaPredicted RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 TMA16Q96EY4 203 aaKnown RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 DDX50Q9BQ39 737 aaKnown RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 EBF3Q9H4W6 596 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 WDR41Q9HAD4 459 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 ZFP37Q9Y6Q3 630 aaPredicted RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 TCAF2A6NFQ2 919 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 CD3EAPO15446 510 aaKnown RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 SUPT7LO94864 414 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 SELPP16109 830 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 HOXD9P28356 352 aaPredicted RBP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 RGRP47804 291 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 TIAL1Q01085 375 aaKnown RBP eCLIP19.4■□□□□ 0.7
COL9A3-201ENST00000343916 ART3Q13508 389 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 CEACAM7Q14002 265 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 PIGGQ5H8A4 983 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 LHX8Q68G74 356 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 GDPD5Q8WTR4 605 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 CCDC126Q96EE4 140 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 SPATA17Q96L03 361 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 SMIM14Q96QK8 99 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 SPON2Q9BUD6 331 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 GSTO2Q9H4Y5 243 aa19.4■□□□□ 0.7
COL9A3-201ENST00000343916 ATP6AP2A0A1C7CYW4 349 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 SLC38A8A6NNN8 435 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 SLC22A2O15244 555 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 TBC1D4O60343 1298 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 ATP6AP2O75787 350 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 GJB5O95377 273 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 ZDHHC11BP0C7U3 371 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 HDCP19113 662 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 TCN1P20061 433 aaPredicted RBP19.39■□□□□ 0.69
COL9A3-201ENST00000343916 CDH13P55290 713 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 TRIP10Q15642 601 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 ZNF423Q2M1K9 1284 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 GALNT7Q86SF2 657 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 PELI3Q8N2H9 469 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 RAET1EQ8TD07 263 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 GATA6Q92908 595 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 FEM1CQ96JP0 617 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 NACA2Q9H009 215 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 PRPF19Q9UMS4 504 aaKnown RBP19.39■□□□□ 0.69
COL9A3-201ENST00000343916 FGF1P05230 155 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 SERPINF2P08697 491 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 HLA-DPA1P20036 260 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 MS4A2Q01362 244 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 NOGQ13253 232 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 SETD3Q86TU7 594 aaPredicted RBP19.39■□□□□ 0.69
COL9A3-201ENST00000343916 PGAM4Q8N0Y7 254 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 SLC43A3Q8NBI5 491 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 FAM156AQ8NDB6 213 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 HMGCLL1Q8TB92 370 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 SERPINI1Q99574 410 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 EML4Q9HC35 981 aaKnown RBP19.39■□□□□ 0.69
COL9A3-201ENST00000343916 LRFN2Q9ULH4 789 aa19.39■□□□□ 0.69
COL9A3-201ENST00000343916 GALTP07902 379 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 ADSLP30566 484 aaPredicted RBP19.38■□□□□ 0.69
COL9A3-201ENST00000343916 AQP4P55087 323 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 GNA12Q03113 381 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 ACVR1Q04771 509 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 FLOT2Q14254 428 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 FAM45BPQ6NSW5 357 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 DENND1CQ8IV53 801 aa19.38■□□□□ 0.69
COL9A3-201ENST00000343916 FAM45AQ8TCE6 357 aa19.38■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms