RNA–Protein interactions for RNA: ENST00000320755.11

COL9A1-201, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 3,059 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-201ENST00000320755 CCDC126Q96EE4 140 aa17.46■□□□□ 0.38
COL9A1-201ENST00000320755 SNX13Q9Y5W8 968 aa17.46■□□□□ 0.38
COL9A1-201ENST00000320755 MIA3Q5JRA6 1907 aa17.46■□□□□ 0.38
COL9A1-201ENST00000320755 CRHR2Q13324 411 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 TRIM25Q14258 630 aaKnown RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 CCDC117Q8IWD4 279 aaPredicted RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 DDIASQ8IXT1 998 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 PTGR2Q8N8N7 351 aaPredicted RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 LRTOMTQ8WZ04 291 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 PPWD1Q96BP3 646 aaKnown RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 Q9H521 79 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 ARNT2Q9HBZ2 717 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 MARCH2Q9P0N8 246 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 UBXN8O00124 270 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 MUSKO15146 869 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 GOT2P00505 430 aaKnown RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 SNRPB2P08579 225 aaKnown RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 SLC2A3P11169 496 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 DNAJB1P25685 340 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 HTR7P34969 479 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 SQLEQ14534 574 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 SLC39A13Q96H72 371 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 EXOC2Q96KP1 924 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 NSUN5Q96P11 429 aaKnown RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 KCNA7Q96RP8 456 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 PRPF18Q99633 342 aaKnown RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 SEPT5Q99719 369 aaPredicted RBP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 MEAF6Q9HAF1 191 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 MID1IP1Q9NPA3 183 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.45■□□□□ 0.38
COL9A1-201ENST00000320755 VPS28Q9UK41 221 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 PCDHB8Q9UN66 801 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 FAM50BQ9Y247 325 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 LZTS1Q9Y250 596 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 AP4S1Q9Y587 144 aa17.45■□□□□ 0.38
COL9A1-201ENST00000320755 LDB2O43679 373 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 GLP2RO95838 553 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 IMPDH1P20839 514 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 TAF10Q12962 218 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 LRRC49Q8IUZ0 686 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 ARRDC2Q8TBH0 407 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 C1orf74Q96LT6 269 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SMIM14Q96QK8 99 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SH3GL3Q99963 347 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 PRDM5Q9NQX1 630 aaPredicted RBP17.44■□□□□ 0.38
COL9A1-201ENST00000320755 VPS45Q9NRW7 570 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SCML2Q9UQR0 700 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 CCDC162PA2VCL2 907 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SLC7A4O43246 635 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 TYMPP19971 482 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 NDST2P52849 883 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SH3BP2P78314 561 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SEMA3AQ14563 771 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 ZNF235Q14590 738 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 UNC50Q53HI1 259 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 MFSD14CQ5VZR4 134 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 ZNF549Q6P9A3 640 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 PAXIP1Q6ZW49 1069 aaPredicted RBP17.44■□□□□ 0.38
COL9A1-201ENST00000320755 DCP1BQ8IZD4 617 aaKnown RBP17.44■□□□□ 0.38
COL9A1-201ENST00000320755 LRCH3Q96II8 777 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 FAR2Q96K12 515 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SPON2Q9BUD6 331 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 TRIM8Q9BZR9 551 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SCN10AQ9Y5Y9 1956 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 TRPM7Q96QT4 1865 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 CD3EAPO15446 510 aaKnown RBP17.44■□□□□ 0.38
COL9A1-201ENST00000320755 CYBAP13498 195 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 GFAPP14136 432 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 FLT3LGP49771 235 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SLC7A2P52569 658 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 FOXA1P55317 472 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 LRP8Q14114 963 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 RFTN1Q14699 578 aaPredicted RBP17.44■□□□□ 0.38
COL9A1-201ENST00000320755 CYTH1Q15438 398 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 MGAT5BQ3V5L5 792 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 CTXN3Q4LDR2 81 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 ZNF678Q5SXM1 525 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 CHSY3Q70JA7 882 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 RTN4RL1Q86UN2 441 aaPredicted RBP17.44■□□□□ 0.38
COL9A1-201ENST00000320755 SLC22A9Q8IVM8 553 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 GRIP2Q9C0E4 1043 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 UNC93B1Q9H1C4 597 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 BTRCQ9Y297 605 aa17.44■□□□□ 0.38
COL9A1-201ENST00000320755 PRSS51A0A1B0GVH4 220 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 NCF1BA6NI72 391 aaPredicted RBP17.43■□□□□ 0.38
COL9A1-201ENST00000320755 NCF1CA8MVU1 366 aaPredicted RBP17.43■□□□□ 0.38
COL9A1-201ENST00000320755 NR5A2O00482 541 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 NRP2O60462 931 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 CLPTM1O96005 669 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 ATXN1LP0C7T5 689 aaKnown RBP17.43■□□□□ 0.38
COL9A1-201ENST00000320755 NCF1P14598 390 aaPredicted RBP17.43■□□□□ 0.38
COL9A1-201ENST00000320755 GRM2Q14416 872 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 MAP7D1Q3KQU3 841 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 CYHR1Q6ZMK1 362 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 RASAL3Q86YV0 1011 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 IFNL1Q8IU54 200 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 ATP6V0D2Q8N8Y2 350 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 TRPC4APQ8TEL6 797 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 C19orf60Q96EN9 201 aa17.43■□□□□ 0.38
COL9A1-201ENST00000320755 FAM193BQ96PV7 902 aaPredicted RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms