RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 IFRD1O00458 451 aaPredicted RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 LSM1O15116 133 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 INPP4BO15327 924 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ASNA1O43681 348 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 UBA1P22314 1058 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 HPCAL1P37235 193 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ST13P50502 369 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ARSFP54793 590 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GTF2IRD2BQ6EKJ0 949 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 HMBOX1Q6NT76 420 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PTAR1Q7Z6K3 402 aaPredicted RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GTF2IRD2Q86UP8 949 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 SNX19Q92543 992 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 VPS33AQ96AX1 596 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GLIS2Q9BZE0 524 aaPredicted RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ADNPQ9H2P0 1102 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 BAG5Q9UL15 447 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 UGT2A1Q9Y4X1 527 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ORC6Q9Y5N6 252 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 A0A0J9YYE9 177 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 A8MT66 165 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 LACTBL1A8MY62 500 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ENO2P09104 434 aaPredicted RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 SBK3P0C264 359 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ERCC2P18074 760 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 HTR7P34969 479 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 KRT6CP48668 564 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GSK3BP49841 420 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TPI1P60174 286 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 OSTNP61366 133 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TUBA1BP68363 451 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CES3Q6UWW8 571 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TUBA1AQ71U36 451 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ADCK1Q86TW2 530 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ZC3H7AQ8IWR0 971 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 FCRL3Q96P31 734 aaPredicted RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CHID1Q9BWS9 393 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CHRAC1Q9NRG0 131 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TESMINQ9Y4I5 508 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 HSPE1-MOB4S4R3N1 261 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 A0A1W2PP18 115 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ILVBLA1L0T0 632 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 FXYD1O00168 92 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 FKBP9O95302 570 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CDH1P12830 882 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 FGFR3P22607 806 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 HTR1EP28566 365 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GRIK1P39086 918 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 NFYCQ13952 458 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 KCTD11Q693B1 232 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PLEKHG7Q6ZR37 379 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 RETREG3Q86VR2 466 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 SCUBE3Q8IX30 993 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 DEFB106AQ8N104 65 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CLEC4FQ8N1N0 589 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ZNF526Q8TF50 670 aaPredicted RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PHF10Q8WUB8 498 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 ELMO2Q96JJ3 720 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 POMKQ9H5K3 350 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 THG1LQ9NWX6 298 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 FZD10Q9ULW2 581 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PCDHGB1Q9Y5G3 927 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 NME4O00746 187 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 AZIN1O14977 448 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GABARAPO95166 117 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 NADKO95544 446 aaPredicted RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PGK1P00558 417 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 NFKB1P19838 968 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 IRF9Q00978 393 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CTBSQ01459 385 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 KCNJ8Q15842 424 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CRY1Q16526 586 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 FXNQ16595 210 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 LARP4Q71RC2 724 aaKnown RBP eCLIP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GALNT7Q86SF2 657 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 AMIGO3Q86WK7 504 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CMTR2Q8IYT2 770 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 OR6B3Q8NGW1 331 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TXNDC15Q96J42 360 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PIWIL1Q96J94 861 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 NODALQ96S42 347 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GMLQ99445 158 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TRIM62Q9BVG3 475 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 CDHR5Q9HBB8 845 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PICK1Q9NRD5 415 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 DPP3Q9NY33 737 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 SLC17A6Q9P2U8 582 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 KLHL3Q9UH77 587 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 UBQLN1Q9UMX0 589 aaKnown RBP4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PNMA8CA0A1B0GUJ8 204 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 FAM149AA5PLN7 773 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TAF4O00268 1085 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 NDUFS2O75306 463 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TFPTP0C1Z6 253 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 MSH3P20585 1137 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 TRPC1P48995 793 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 LIPEQ05469 1076 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 PRKG2Q13237 762 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 GEN1Q17RS7 908 aa4.79□□□□□ -1.64
PTPN13-201ENST00000316707 C6orf141Q5SZD1 244 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 65.6 ms