RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 OR6B1O95007 311 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PROCP04070 461 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PRKCBP05771 671 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PRKAR1AP10644 381 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 NPR3P17342 541 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PRKACAP17612 351 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CHI3L1P36222 383 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 GUCA1AP43080 201 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 IREB2P48200 963 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 USP46P62068 366 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CDH17Q12864 832 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TYSND1Q2T9J0 566 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TBCELQ5QJ74 424 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 BROXQ5VW32 411 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 C16orf46Q6P387 395 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 UGT2A3Q6UWM9 527 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MPZL3Q6UWV2 235 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ANKFN1Q8N957 763 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 OR7A2PQ8NGA2 310 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TFB1MQ8WVM0 346 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 SEMA6AQ9H2E6 1030 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 POPDC2Q9HBU9 364 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ARHGEF38Q9NXL2 777 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 XPR1Q9UBH6 696 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 FAM50BQ9Y247 325 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 GJA3Q9Y6H8 435 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 NHSL1Q5SYE7 1610 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TCP10L2B9ZVM9 353 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 POLRMTO00411 1230 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 KCNN4O15554 427 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 HS6ST1O60243 411 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TSPAN1O60635 241 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 LRCH4O75427 683 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 SNAPC5O75971 98 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 GM2AP17900 193 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 HOXA13P31271 388 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 SSTR3P32745 418 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 PTGER2P43116 358 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CYP4F2P78329 520 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CYP4F3Q08477 520 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ZNF423Q2M1K9 1284 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 AGAP9Q5VTM2 703 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 EGFLAMQ63HQ2 1017 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 LCLAT1Q6UWP7 414 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ZDHHC14Q8IZN3 488 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MRPL48Q96GC5 212 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 BBS4Q96RK4 519 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 UHRF1Q96T88 793 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 NUSAP1Q9BXS6 441 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 TUBG2Q9NRH3 451 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CD274Q9NZQ7 290 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 SEPT9Q9UHD8 586 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 PCDHB8Q9UN66 801 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 DOLKQ9UPQ8 538 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 A0A1W2PPM1 405 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ARL5CA6NH57 179 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 HAT1O14929 419 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CCNE2O96020 404 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PRH1P02810 166 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CLUP10909 449 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CREB1P16220 341 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MYL12AP19105 171 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 GRIA2P42262 883 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ALDH3B2P48448 385 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 GABARAPL2P60520 117 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 RNF151Q2KHN1 245 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 EPGNQ6UW88 154 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TMEM26Q6ZUK4 368 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TMC7Q7Z402 723 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CHERPQ8IWX8 916 aaKnown RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 SPAG16Q8N0X2 631 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 DHRSXQ8N5I4 330 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 MTMR14Q8NCE2 650 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 HTR3CQ8WXA8 447 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CENPNQ96H22 339 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 CCDC74BQ96LY2 380 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 RHOJQ9H4E5 214 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 NMRAL1Q9HBL8 299 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 ARMC1Q9NVT9 282 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 SLC17A7Q9P2U7 560 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 TNFSF13BQ9Y275 285 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 PCYT1BQ9Y5K3 369 aaPredicted RBP6.43□□□□□ -1.38
VPS35-201ENST00000299138 RGPD5Q99666 1765 aa6.43□□□□□ -1.38
VPS35-201ENST00000299138 CLOCKO15516 846 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GDF11O95390 407 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 TCF4P15884 667 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 NFKB1P19838 968 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 ALDH3A2P51648 485 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PHC1P78364 1004 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PTSQ03393 145 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 KIAA1841Q6NSI8 718 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 GALNT18Q6P9A2 607 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 SLC26A9Q7LBE3 791 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 ZNF597Q96LX8 424 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 PANX3Q96QZ0 392 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 MRPL57Q9BQC6 102 aaKnown RBP6.42□□□□□ -1.38
VPS35-201ENST00000299138 NFKBIZQ9BYH8 718 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 KCNK13Q9HB14 408 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 HOXC10Q9NYD6 342 aa6.42□□□□□ -1.38
VPS35-201ENST00000299138 NKIRAS2Q9NYR9 191 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms