RNA–Protein interactions for RNA: ENST00000292476.9

CPSF4-201, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CPSF4, Length 1,691 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-201ENST00000292476 ARMCX1Q9P291 453 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 DNAJC16Q9Y2G8 782 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 PSAT1Q9Y617 370 aa16.89■□□□□ 0.29
CPSF4-201ENST00000292476 MYO18AQ92614 2054 aaKnown RBP16.89■□□□□ 0.29
CPSF4-201ENST00000292476 TMEM114B3SHH9 223 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 CBX4O00257 560 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 CIB2O75838 187 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 EPOP01588 193 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 PRKCGP05129 697 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 APOA4P06727 396 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ENO1P06733 434 aaKnown RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 SERPINF2P08697 491 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 SLC34A1Q06495 639 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 TUBB3Q13509 450 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 LAMB3Q13751 1172 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 KCNC3Q14003 757 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 CCDC6Q16204 474 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 DCAF4L2Q8NA75 395 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 TTC16Q8NEE8 873 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 FIBINQ8TAL6 211 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 KCNV2Q8TDN2 545 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 MIEF2Q96C03 454 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ZNF707Q96C28 371 aaPredicted RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 RILPQ96NA2 401 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 APOL5Q9BWW9 433 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 SNX15Q9NRS6 342 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 VPS28Q9UK41 221 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 APOBEC2Q9Y235 224 aaKnown RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ZCWPW2A0A1B0GU75 182 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 PMPCBO75439 489 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 MT-CYBP00156 380 aaPredicted RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ADRA1AP35348 466 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 HK2P52789 917 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 PRKAA2P54646 552 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 WNT3AP56704 352 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ABCE1P61221 599 aaKnown RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 BLMHQ13867 455 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 RCN1Q15293 331 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ANKRD20A4Q4UJ75 823 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 RALGPS1Q5JS13 557 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 PCID2Q5JVF3 399 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 RETSATQ6NUM9 610 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 RANBP10Q6VN20 620 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 CLEC14AQ86T13 490 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 LMNTD2Q8IXW0 634 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 RBM15BQ8NDT2 890 aaKnown RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 USP13Q92995 863 aaPredicted RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ZNF669Q96BR6 464 aaPredicted RBP16.88■□□□□ 0.29
CPSF4-201ENST00000292476 ZNF778Q96MU6 729 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 MGME1Q9BQP7 344 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 FEM1AQ9BSK4 669 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 FICDQ9BVA6 458 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 GPAMQ9HCL2 828 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 SOX13Q9UN79 622 aa16.88■□□□□ 0.29
CPSF4-201ENST00000292476 NVLO15381 856 aaKnown RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 KIF1CO43896 1103 aaKnown RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 USP12O75317 370 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 ERVK-10P10266 1014 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 RALBP11234 206 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 BMP1P13497 986 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 CPA3P15088 417 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 PRDX6P30041 224 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 CD86P42081 329 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 SLC5A9Q2M3M2 681 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 PTCRAQ6ISU1 281 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 C16orf46Q6P387 395 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 ZCCHC23Q6ZST2 131 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 APLFQ8IW19 511 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 SCUBE1Q8IWY4 988 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 DCLK2Q8N568 766 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 CELF5Q8N6W0 485 aaKnown RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 PPHLN1Q8NEY8 458 aaKnown RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 GABPB2Q8TAK5 448 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 RDH11Q8TC12 318 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 DNAJC9Q8WXX5 260 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 TADA1Q96BN2 335 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 ZNF419Q96HQ0 510 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 MSLNLQ96KJ4 702 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 MRGPRX2Q96LB1 330 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 FCRL3Q96P31 734 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 SORT1Q99523 831 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 MCMBPQ9BTE3 642 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 ZNF395Q9H8N7 513 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 MRM3Q9HC36 420 aaKnown RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 MARCOQ9UEW3 520 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 CD207Q9UJ71 328 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 ANGPTL2Q9UKU9 493 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 ANKRD6Q9Y2G4 727 aa16.87■□□□□ 0.29
CPSF4-201ENST00000292476 ARIH1Q9Y4X5 557 aaPredicted RBP16.87■□□□□ 0.29
CPSF4-201ENST00000292476 TOP3BO95985 862 aaKnown RBP16.86■□□□□ 0.29
CPSF4-201ENST00000292476 KITP10721 976 aa16.86■□□□□ 0.29
CPSF4-201ENST00000292476 IL9P15248 144 aa16.86■□□□□ 0.29
CPSF4-201ENST00000292476 POLD2P49005 469 aa16.86■□□□□ 0.29
CPSF4-201ENST00000292476 PLK1P53350 603 aa16.86■□□□□ 0.29
CPSF4-201ENST00000292476 NSUN2Q08J23 767 aaKnown RBP eCLIP16.86■□□□□ 0.29
CPSF4-201ENST00000292476 KDELC1Q6UW63 502 aa16.86■□□□□ 0.29
CPSF4-201ENST00000292476 STRA8Q7Z7C7 330 aa16.86■□□□□ 0.29
CPSF4-201ENST00000292476 C10orf107Q8IVU9 208 aa16.86■□□□□ 0.29
CPSF4-201ENST00000292476 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP16.86■□□□□ 0.29
CPSF4-201ENST00000292476 OR52K2Q8NGK3 314 aa16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms