RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 UBFD1O14562 309 aaKnown RBP20.11■□□□□ 0.81
VPS53-201ENST00000291074 CD3EAPO15446 510 aaKnown RBP20.11■□□□□ 0.81
VPS53-201ENST00000291074 GLP2RO95838 553 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 INHAP05111 366 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 GALTP07902 379 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 PEX2P28328 305 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 TIAL1Q01085 375 aaKnown RBP eCLIP20.11■□□□□ 0.81
VPS53-201ENST00000291074 IL31Q6EBC2 164 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 C16orf89Q6UX73 402 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 BNC2Q6ZN30 1099 aaPredicted RBP20.11■□□□□ 0.81
VPS53-201ENST00000291074 ADGRG6Q86SQ4 1221 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 GSTO2Q9H4Y5 243 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 FGF1P05230 155 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 XRCC1P18887 633 aaPredicted RBP20.11■□□□□ 0.81
VPS53-201ENST00000291074 HLA-DPA1P20036 260 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 ATXN3P54252 364 aaPredicted RBP20.11■□□□□ 0.81
VPS53-201ENST00000291074 CLEC6AQ6EIG7 209 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 GALNT7Q86SF2 657 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 CEP70Q8NHQ1 597 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 DLGAP2Q9P1A6 1054 aa20.11■□□□□ 0.81
VPS53-201ENST00000291074 TCAF2A6NFQ2 919 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 TBKBP1A7MCY6 615 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 LINGO3P0C6S8 592 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 SGSHP51688 502 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 GNA12Q03113 381 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 ACVR1Q04771 509 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 ARMC3Q5W041 872 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 KBTBD6Q86V97 674 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 PELI3Q8N2H9 469 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 HMGCLL1Q8TB92 370 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 CCDC126Q96EE4 140 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 TTPALQ9BTX7 342 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 NACA2Q9H009 215 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 ELAC1Q9H777 363 aaKnown RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 STK39Q9UEW8 545 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 PRPF19Q9UMS4 504 aaKnown RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 SPO11Q9Y5K1 396 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 SLC22A2O15244 555 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 ACSL4O60488 711 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 TRPA1O75762 1119 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 UBTFL6P0CB48 400 aaPredicted RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 COL6A1P12109 1028 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 CEACAM7Q14002 265 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 SFT2D3Q587I9 215 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 FAM45BPQ6NSW5 357 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 SETD3Q86TU7 594 aaPredicted RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 DENND1CQ8IV53 801 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 FAM45AQ8TCE6 357 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 STON2Q8WXE9 905 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 TMA16Q96EY4 203 aaKnown RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 TSEN34Q9BSV6 310 aaKnown RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 WDR41Q9HAD4 459 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 ANKRD36A6QL64 1941 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 RPP40O75818 363 aaKnown RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 SUPT7LO94864 414 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 SERPINF2P08697 491 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 FDXRP22570 491 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 PIGGQ5H8A4 983 aa20.1■□□□□ 0.81
VPS53-201ENST00000291074 ZNF512Q96ME7 567 aaPredicted RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 PRICKLE1Q96MT3 831 aaPredicted RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 POLR3BQ9NW08 1133 aaPredicted RBP20.1■□□□□ 0.81
VPS53-201ENST00000291074 HDCP19113 662 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 CDH13P55290 713 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 HERC3Q15034 1050 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 ZNF423Q2M1K9 1284 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 FBXO22Q8NEZ5 403 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 BRSK1Q8TDC3 778 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 GDPD5Q8WTR4 605 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 TRIB3Q96RU7 358 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 EBF3Q9H4W6 596 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 DNMT3LQ9UJW3 386 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 ANKRD12Q6UB98 2062 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 LRRC14BA6NHZ5 514 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 ADSLP30566 484 aaPredicted RBP20.09■□□□□ 0.81
VPS53-201ENST00000291074 ATP5C1P36542 298 aaKnown RBP20.09■□□□□ 0.81
VPS53-201ENST00000291074 ART3Q13508 389 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 TRIP10Q15642 601 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 ANKS3Q6ZW76 656 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 SDCCAG8Q86SQ7 713 aaPredicted RBP20.09■□□□□ 0.81
VPS53-201ENST00000291074 PGAM4Q8N0Y7 254 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 EML4Q9HC35 981 aaKnown RBP20.09■□□□□ 0.81
VPS53-201ENST00000291074 SLC24A3Q9HC58 644 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 CATSPERZQ9NTU4 200 aa20.09■□□□□ 0.81
VPS53-201ENST00000291074 ATP6AP2A0A1C7CYW4 349 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 H3BNC9 293 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 ATP6AP2O75787 350 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 CD1DP15813 335 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 SCNN1BP51168 640 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 MS4A2Q01362 244 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 ZNF678Q5SXM1 525 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 NPAS4Q8IUM7 802 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 FAM156AQ8NDB6 213 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 OR4L1Q8NH43 312 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 MGME1Q9BQP7 344 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 PPP1R12CQ9BZL4 782 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 EFCAB1Q9HAE3 211 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 MEAF6Q9HAF1 191 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 GKN1Q9NS71 199 aa20.08■□□□□ 0.81
VPS53-201ENST00000291074 H3BMM5 538 aa20.08■□□□□ 0.8
VPS53-201ENST00000291074 H7C4K7 107 aa20.08■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms