RNA–Protein interactions for RNA: ENST00000054666.10

VAMP3-201, Transcript of vesicle associated membrane protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAMP3, Length 2,205 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP3-201ENST00000054666 INTS10Q9NVR2 710 aaKnown RBP8.29□□□□□ -1.08
VAMP3-201ENST00000054666 MARCH4Q9P2E8 410 aaPredicted RBP8.29□□□□□ -1.08
VAMP3-201ENST00000054666 AGO1Q9UL18 857 aaKnown RBP8.29□□□□□ -1.08
VAMP3-201ENST00000054666 OGDHLQ9ULD0 1010 aa8.29□□□□□ -1.08
VAMP3-201ENST00000054666 CRYL1Q9Y2S2 319 aa8.29□□□□□ -1.08
VAMP3-201ENST00000054666 KCTD3Q9Y597 815 aa8.29□□□□□ -1.08
VAMP3-201ENST00000054666 LOC100653049A0A140TA62 436 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 UBA6A0AVT1 1052 aaPredicted RBP8.28□□□□□ -1.08
VAMP3-201ENST00000054666 CCDC162PA2VCL2 907 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 CARNS1A5YM72 827 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 NEMP2A6NFY4 417 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 BUD23O43709 281 aaKnown RBP8.28□□□□□ -1.08
VAMP3-201ENST00000054666 ZBTB14O43829 449 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 KRT34O76011 436 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 SEC24AO95486 1093 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 PIRTP0C851 137 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 MBL2P11226 248 aaPredicted RBP8.28□□□□□ -1.08
VAMP3-201ENST00000054666 FDXRP22570 491 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 PIK3R1P27986 724 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 STC1P52823 247 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 EPHB1P54762 984 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 SATB1Q01826 763 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 PDAP1Q13442 181 aaKnown RBP8.28□□□□□ -1.08
VAMP3-201ENST00000054666 GPR158Q5T848 1215 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 C16orf89Q6UX73 402 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 RAB44Q7Z6P3 723 aaPredicted RBP8.28□□□□□ -1.08
VAMP3-201ENST00000054666 DEFB107AQ8IZN7 70 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 LSMEM2Q8N112 164 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 LPCAT1Q8NF37 534 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 OR13C4Q8NGS5 318 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 DTX3LQ8TDB6 740 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 ACTRT2Q8TDY3 377 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 MOCOSQ96EN8 888 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 UBXN10Q96LJ8 280 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 PANX3Q96QZ0 392 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 TRIB3Q96RU7 358 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 CLSTN3Q9BQT9 956 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 TRMOQ9BU70 441 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 HERC2P3Q9BVR0 1158 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 TDRD1Q9BXT4 1180 aaKnown RBP8.28□□□□□ -1.08
VAMP3-201ENST00000054666 ALG9Q9H6U8 611 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 SUDS3Q9H7L9 328 aaPredicted RBP8.28□□□□□ -1.08
VAMP3-201ENST00000054666 POPDC3Q9HBV1 291 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 TRPC7Q9HCX4 862 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 NDE1Q9NXR1 346 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 SAGE1Q9NXZ1 904 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 VPS9D1Q9Y2B5 631 aa8.28□□□□□ -1.08
VAMP3-201ENST00000054666 H3BNC9 293 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 NVLO15381 856 aaKnown RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 GRID2O43424 1007 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 CCNT2O60583 730 aaKnown RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 TSPAN3O60637 253 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 FKBP6O75344 327 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 SKAP2O75563 359 aaPredicted RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 ABLIM3O94929 683 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 LATS1O95835 1130 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 EFEMP2O95967 443 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 C1RP00736 705 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 ITGAXP20702 1163 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 VEGFBP49765 207 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 NUDT2P50583 147 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 ZNF140P52738 457 aaPredicted RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 PLK1P53350 603 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 CLNS1AP54105 237 aaKnown RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 EPHB3P54753 998 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 CDKN2DP55273 166 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 DSG1Q02413 1049 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 TBL3Q12788 808 aaKnown RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 TAF1AQ15573 450 aaPredicted RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 TYSND1Q2T9J0 566 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 TRIM60Q495X7 471 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 RNF219Q5W0B1 726 aaPredicted RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 ZNF783Q6ZMS7 281 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 LRRC74BQ6ZQY2 392 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 FRMD7Q6ZUT3 714 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 C16orf59Q7L2K0 433 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 PIM3Q86V86 326 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 SNX32Q86XE0 403 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 OR52K2Q8NGK3 314 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 RP9Q8TA86 221 aaKnown RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 EXT2Q93063 718 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 PHF21BQ96EK2 531 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 NAF1Q96HR8 494 aaKnown RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 ZNF570Q96NI8 536 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 CATSPER2Q96P56 530 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 SERPINI1Q99574 410 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 VN1R3Q9BXE9 311 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 ADGRE3Q9BY15 652 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 GKN1Q9NS71 199 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 NLE1Q9NVX2 485 aaPredicted RBP8.27□□□□□ -1.08
VAMP3-201ENST00000054666 CDH22Q9UJ99 828 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 FIS1Q9Y3D6 152 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 ACTL7AQ9Y615 435 aa8.27□□□□□ -1.08
VAMP3-201ENST00000054666 A0A088AWK7 358 aa8.27□□□□□ -1.09
VAMP3-201ENST00000054666 RGSL1A5PLK6 1076 aa8.27□□□□□ -1.09
VAMP3-201ENST00000054666 H0Y626 953 aa8.27□□□□□ -1.09
VAMP3-201ENST00000054666 NDUFS3O75489 264 aa8.27□□□□□ -1.09
VAMP3-201ENST00000054666 RHOBTB1O94844 696 aa8.27□□□□□ -1.09
VAMP3-201ENST00000054666 PENKP01210 267 aaPredicted RBP8.27□□□□□ -1.09
VAMP3-201ENST00000054666 KLKB1P03952 638 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms