RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 MAGEE2Q8TD90 523 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF558Q96NG5 402 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 SEPT5Q99719 369 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 EBNA1BP2Q99848 306 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 YTHDF1Q9BYJ9 559 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KAT8Q9H7Z6 458 aaKnown RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 KLHL1Q9NR64 748 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 ASAH2Q9NR71 780 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 THAP1Q9NVV9 213 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 RGS17Q9UGC6 210 aaPredicted RBP2.8□□□□□ -1.96
SCN1A-219ENST00000641575 GTF2A1LQ9UNN4 478 aa2.8□□□□□ -1.96
SCN1A-219ENST00000641575 CLTCL1P53675 1640 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CCDC154A6NI56 674 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MCIDASD6RGH6 385 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CCDC188H7C350 402 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GTPBP1O00178 669 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AP2A1O95782 977 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SERPINA1P01009 418 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GSTM1P09488 218 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 UMPSP11172 480 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 POU5F1BQ06416 359 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ITPRIPL2Q3MIP1 535 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SLC35F1Q5T1Q4 408 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KCTD18Q6PI47 426 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AFTPHQ6ULP2 937 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 VSTM4Q8IW00 320 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 STK40Q8N2I9 435 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM35BQ8NCS4 154 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KBTBD8Q8NFY9 601 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TCTN2Q96GX1 697 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SCGB3A2Q96PL1 93 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SLC9A7Q96T83 725 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SLC38A3Q99624 504 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ERP44Q9BS26 406 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 BRD7Q9NPI1 651 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DCP1AQ9NPI6 582 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PRMT7Q9NVM4 692 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RDH8Q9NYR8 311 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 GMIPQ9P107 970 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LRFN1Q9P244 771 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 AAR2Q9Y312 384 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FRMPD2Q68DX3 1309 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 A0A087X0B3 334 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TRPC5OSA6NMA1 111 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DGKIO75912 1065 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SUPT7LO94864 414 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KDM4BO94953 1096 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 STOMP27105 288 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CHI3L1P36222 383 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MLLT3P42568 568 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MAGEA12P43365 314 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CDH8P55286 799 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PFKFB3Q16875 520 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TIMM50Q3ZCQ8 353 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ACSM3Q53FZ2 586 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FAM76BQ5HYJ3 339 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 UBXN11Q5T124 520 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KIAA0895LQ68EN5 471 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MZT2AQ6P582 158 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 FIGNL1Q6PIW4 674 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZC3H7AQ8IWR0 971 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MUC15Q8N387 334 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF563Q8TA94 476 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 C9orf43Q8TAL5 461 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RAD54LQ92698 747 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 MYLPFQ96A32 169 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 LGMNQ99538 433 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF184Q99676 751 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CDH19Q9H159 772 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 PTGES2Q9H7Z7 377 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CYP4F12Q9HCS2 524 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TLR7Q9NYK1 1049 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CYTH4Q9UIA0 394 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SERTAD3Q9UJW9 196 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 SMG5Q9UPR3 1016 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CNTN6Q9UQ52 1028 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ANPEPP15144 967 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF23P17027 643 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ALAS2P22557 587 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 DDX6P26196 483 aaKnown RBP eCLIP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TKTP29401 623 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RGS6P49758 472 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 USP11P51784 963 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RPS7P62081 194 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ADAM17P78536 824 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CYP51A1Q16850 503 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 HKDC1Q2TB90 917 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 NLRP10Q86W26 655 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ANKRD13CQ8N6S4 541 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 CPA5Q8WXQ8 436 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 RORBQ92753 470 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TXN2Q99757 166 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 NTPCRQ9BSD7 190 aaKnown RBP2.79□□□□□ -1.96
SCN1A-219ENST00000641575 ROGDIQ9GZN7 287 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 TLE6Q9H808 572 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 XPR1Q9UBH6 696 aa2.79□□□□□ -1.96
SCN1A-219ENST00000641575 EIF3KQ9UBQ5 218 aaKnown RBP2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms