RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 BCAS2O75934 225 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 OAZ2O95190 189 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 VAPBO95292 243 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 IL1BP01584 269 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SERPINE1P05121 402 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TRAPPC2P0DI81 140 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TRAPPC2BP0DI82 140 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TFE3P19532 575 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 RPS3P23396 243 aaKnown RBP eCLIP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 POU1F1P28069 291 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 GTF2E2P29084 291 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SLC7A1P30825 629 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ETV5P41161 510 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 LIG4P49917 911 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 HK3P52790 923 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 YWHAEP62258 255 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 RELQ04864 619 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 GPAT3Q53EU6 434 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 RBM48Q5RL73 367 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TPRG1LQ5T0D9 272 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 BHLHB9Q6PI77 547 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 NSMFQ6X4W1 530 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 FAM124AQ86V42 546 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 NT5DC4Q86YG4 428 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 OR7G3Q8NG95 312 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 GRIN3AQ8TCU5 1115 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 BLOC1S5Q8TDH9 187 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 HEXDCQ8WVB3 486 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 LPGAT1Q92604 370 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 RCN3Q96D15 328 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SERPINB11Q96P15 392 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 IL12RB2Q99665 862 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 AGPAT1Q99943 283 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TRAF4Q9BUZ4 470 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 FUNDC2Q9BWH2 189 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PIGUQ9H490 435 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 OSGEPL1Q9H4B0 414 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 LRRC40Q9H9A6 602 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SPON1Q9HCB6 807 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TM9SF3Q9HD45 589 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SMOXQ9NWM0 555 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 MPP6Q9NZW5 540 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SHOC2Q9UQ13 582 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 VPS9D1Q9Y2B5 631 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TPRKBQ9Y3C4 175 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 MAGED1Q9Y5V3 778 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 HTR3BO95264 441 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 LDLRP01130 860 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 CLUP10909 449 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SFTPCP11686 197 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SERPINB9P50453 376 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SEC23AQ15436 765 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 FASTKD1Q53R41 847 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 EFHC2Q5JST6 749 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SAMD4BQ5PRF9 694 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TMEM236Q5W0B7 351 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 MZT2BQ6NZ67 158 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 C3orf33Q6P1S2 294 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ZCCHC23Q6ZST2 131 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ERMP1Q7Z2K6 904 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 FRMD5Q7Z6J6 570 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 LYSMD2Q8IV50 215 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 UBR7Q8N806 425 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 OR13F1Q8NGS4 319 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 UFD1Q92890 307 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PTERQ96BW5 349 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TOE1Q96GM8 510 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TINF2Q9BSI4 451 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 BEX2Q9BXY8 128 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SLC22A4Q9H015 551 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 AKIP1Q9NQ31 210 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 NECTIN3Q9NQS3 549 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 GPN3Q9UHW5 284 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ANAPC7Q9UJX3 599 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 USP31Q70CQ4 1352 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ATP6AP2A0A1C7CYW4 349 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 KDM4FA0A1W2PPD8 638 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SDR42E2A6NKP2 422 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SLC30A4O14863 429 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 INPPL1O15357 1258 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 KLRC4O43908 158 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 DFNA5O60443 496 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 MICAL2O94851 1124 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PLA2G4BP0C869 781 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 BMP1P13497 986 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 BTF3P20290 206 aaKnown RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SSTR1P30872 391 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 SCN1BQ07699 218 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 FSTL1Q12841 308 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PEX6Q13608 980 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 TAF1CQ15572 869 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-216ENST00000637968 KLHL26Q53HC5 615 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 YIF1BQ5BJH7 314 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ANKS6Q68DC2 871 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 PNCKQ6P2M8 343 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 C16orf86Q6ZW13 317 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 KRT25Q7Z3Z0 450 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 ANKS1BQ7Z6G8 1248 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 THAP5Q7Z6K1 395 aa5.76□□□□□ -1.49
SCN1A-216ENST00000637968 STRA8Q7Z7C7 330 aa5.76□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms