RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 SNX11Q9Y5W9 270 aa13.57□□□□□ -0.24
LINC00540-202ENST00000616974 ZFC3H1O60293 1989 aaKnown RBP13.56□□□□□ -0.24
LINC00540-202ENST00000616974 K7ESM1 405 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 PMPCBO75439 489 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 FGGP02679 453 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 C6P13671 934 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 IL9RQ01113 521 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 WDR45BQ5MNZ6 344 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 FAXCQ5TGI0 409 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 SLC23A3Q6PIS1 610 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 SPATS2Q86XZ4 545 aaKnown RBP13.56□□□□□ -0.24
LINC00540-202ENST00000616974 PLA2G15Q8NCC3 412 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 LPCAT1Q8NF37 534 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 SLC35B2Q8TB61 432 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 EID2BQ96D98 161 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 IMP4Q96G21 291 aaKnown RBP13.56□□□□□ -0.24
LINC00540-202ENST00000616974 BMFQ96LC9 184 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 ZNF641Q96N77 438 aaPredicted RBP13.56□□□□□ -0.24
LINC00540-202ENST00000616974 TUBGCP5Q96RT8 1024 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 SLC17A9Q9BYT1 436 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 GLOD4Q9HC38 313 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 PREBQ9HCU5 417 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 AASDHPPTQ9NRN7 309 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 IGF2RP11717 2491 aa13.56□□□□□ -0.24
LINC00540-202ENST00000616974 NRDCO43847 1150 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 TJP3O95049 919 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 HNF1BP35680 557 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 CNGA3Q16281 694 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 ZNF542PQ5EBM4 170 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 DARS2Q6PI48 645 aaKnown RBP13.55□□□□□ -0.24
LINC00540-202ENST00000616974 PAF1Q8N7H5 531 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 OR13H1Q8NG92 308 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 TRIB3Q96RU7 358 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 MLPHQ9BV36 600 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-202ENST00000616974 EDEM2Q9BV94 578 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 CARD9Q9H257 536 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 CD84Q9UIB8 345 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 EFR3BQ9Y2G0 817 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 FNDC3AQ9Y2H6 1198 aaKnown RBP13.55□□□□□ -0.24
LINC00540-202ENST00000616974 AURKAO14965 403 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 SCAMP1O15126 338 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 AP1G1O43747 822 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 CEP104O60308 925 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 CPP00450 1065 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 SERPINF2P08697 491 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 PSMB4P28070 264 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 KCNJ1P48048 391 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 CCR5P51681 352 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 DUOXA1Q1HG43 343 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 AASDHQ4L235 1098 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-202ENST00000616974 CFAP58Q5T655 872 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 BRAT1Q6PJG6 821 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 LIPIQ6XZB0 460 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 PID1Q7Z2X4 250 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 HSD11B1LQ7Z5J1 315 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 TADA1Q96BN2 335 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 APOL2Q9BQE5 337 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 C1QTNF2Q9BXJ5 285 aa13.55□□□□□ -0.24
LINC00540-202ENST00000616974 PIH1D1Q9NWS0 290 aaKnown RBP13.55□□□□□ -0.24
LINC00540-202ENST00000616974 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.55□□□□□ -0.24
LINC00540-202ENST00000616974 KLHL8Q9P2G9 620 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-202ENST00000616974 C4orf47A7E2U8 309 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 KHNYNO15037 678 aaKnown RBP13.54□□□□□ -0.24
LINC00540-202ENST00000616974 USP12O75317 370 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 NEBLO76041 1014 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 ZSCAN5DPP0CG00 497 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 IGFALSP35858 605 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 HSPA9P38646 679 aaKnown RBP13.54□□□□□ -0.24
LINC00540-202ENST00000616974 ETV3P41162 512 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 SPARCL1Q14515 664 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 TCEA2Q15560 299 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 SEL1L2Q5TEA6 688 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 KDELC1Q6UW63 502 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 BBS5Q8N3I7 341 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 RMDN1Q96DB5 314 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 PCDH9Q9HC56 1237 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 ANKRD6Q9Y2G4 727 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 PLXNB3Q9ULL4 1909 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 A0A1B0GTW7 788 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 LIASO43766 372 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 SOCS5O75159 536 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 METTL18O95568 372 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 XPAP23025 273 aaPredicted RBP13.54□□□□□ -0.24
LINC00540-202ENST00000616974 AFF3P51826 1226 aaKnown RBP13.54□□□□□ -0.24
LINC00540-202ENST00000616974 RPS21P63220 83 aaKnown RBP13.54□□□□□ -0.24
LINC00540-202ENST00000616974 OASLQ15646 514 aaKnown RBP13.54□□□□□ -0.24
LINC00540-202ENST00000616974 QPCTQ16769 361 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 WSCD2Q2TBF2 565 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 ANKRD20A2Q5SQ80 823 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 ARMC12Q5T9G4 340 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 ANKRD20A1Q5TYW2 823 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 ANKRD20A3Q5VUR7 823 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 CRTC1Q6UUV9 634 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 MINDY1Q8N5J2 469 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 TP53I13Q8NBR0 393 aaPredicted RBP13.54□□□□□ -0.24
LINC00540-202ENST00000616974 CENPTQ96BT3 561 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 FEM1CQ96JP0 617 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 MRGPRX2Q96LB1 330 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 AP1M1Q9BXS5 423 aa13.54□□□□□ -0.24
LINC00540-202ENST00000616974 SLC25A51Q9H1U9 297 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms