RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 FGF1P05230 155 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 JMJD7P0C870 316 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 FGF3P11487 239 aaPredicted RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 CD1CP29017 333 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 RFC1P35251 1148 aaPredicted RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 MMP12P39900 470 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 RGRP47804 291 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 LIG3P49916 1009 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 YBEYP58557 167 aaPredicted RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 FMO1Q01740 532 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 TLE1Q04724 770 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 RAD51Q06609 339 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 RALGDSQ12967 914 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 MTM1Q13496 603 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 SQSTM1Q13501 440 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 NR1D2Q14995 579 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 MAN2A1Q16706 1144 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 C14orf28Q4W4Y0 310 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 VWA3BQ502W6 1294 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 MANEAQ5SRI9 462 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 TAF3Q5VWG9 929 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 NAA35Q5VZE5 725 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 AFMIDQ63HM1 303 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 RWDD4Q6NW29 188 aaKnown RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 WDR59Q6PJI9 974 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 LIPIQ6XZB0 460 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 RD3Q7Z3Z2 195 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 ZNF438Q7Z4V0 828 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 PHLDB2Q86SQ0 1253 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 CAMK1DQ8IU85 385 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 UMODL1-AS1Q8N2C9 162 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 RTL3Q8N8U3 475 aaKnown RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 FAM46DQ8NEK8 389 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 EPS8L1Q8TE68 723 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 PMEPA1Q969W9 287 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 NTAN1Q96AB6 310 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 ECHDC3Q96DC8 303 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 TBC1D31Q96DN5 1066 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 WDR92Q96MX6 357 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 GDAP1L1Q96MZ0 367 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 PCDHB18PQ96TA0 734 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 ARHGAP9Q9BRR9 750 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 LGR4Q9BXB1 951 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 SLC25A18Q9H1K4 315 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 NDST4Q9H3R1 872 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 LRRC19Q9H756 370 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 SYNDIG1Q9H7V2 258 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 PDFQ9HBH1 243 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 MRPL40Q9NQ50 206 aaKnown RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 METTL5Q9NRN9 209 aaKnown RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 SPATS2LQ9NUQ6 558 aaKnown RBP6.15□□□□□ -1.42
VRK3-220ENST00000600259 ANKMY1Q9P2S6 941 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 LRIT1Q9P2V4 623 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 KLQ9UEF7 1012 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 HPCAL4Q9UM19 191 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 DOLKQ9UPQ8 538 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 DAAM1Q9Y4D1 1078 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 PCDHGA3Q9Y5H0 932 aa6.15□□□□□ -1.42
VRK3-220ENST00000600259 SPTAN1Q13813 2472 aaKnown RBP6.15□□□□□ -1.43
VRK3-220ENST00000600259 UNC79Q9P2D8 2635 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 NBPF19A0A087WUL8 3843 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 J3KR12 359 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 AGRPO00253 132 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 ATMINO43313 823 aaPredicted RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 RECQL5O94762 991 aaPredicted RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 IGSF6O95976 241 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 PRKCGP05129 697 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 UNGP13051 313 aaPredicted RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 UCHL3P15374 230 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 CD82P27701 267 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 HTR1BP28222 390 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 SDC4P31431 198 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 MTIF2P46199 727 aaKnown RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 CSNK1DP48730 415 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 MAPK10P53779 464 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 OR1D5P58170 312 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 KIAA1024LP59773 190 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 RHOAP61586 193 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 FOXK1P85037 733 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 ELP6Q0PNE2 266 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 UBAP2LQ14157 1087 aaKnown RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 IGFBP7Q16270 282 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 CDO1Q16878 200 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 EFHC2Q5JST6 749 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 SPECC1LQ69YQ0 1117 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 TAF8Q7Z7C8 310 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 CREBRFQ8IUR6 639 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 OR56A4Q8NGH8 313 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 SLC30A5Q8TAD4 765 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 ZNF564Q8TBZ8 553 aaPredicted RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 GPBAR1Q8TDU6 330 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 FAM172AQ8WUF8 416 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 SLC20A1Q8WUM9 679 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 PTCD2Q8WV60 388 aaKnown RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 EXOC2Q96KP1 924 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 ZNF641Q96N77 438 aaPredicted RBP6.14□□□□□ -1.43
VRK3-220ENST00000600259 PSMG3-AS1Q96PY0 264 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 CMKLR1Q99788 373 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 NUDT22Q9BRQ3 303 aa6.14□□□□□ -1.43
VRK3-220ENST00000600259 STK33Q9BYT3 514 aa6.14□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms