RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 RCOR2Q8IZ40 523 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 CBARPQ8N350 705 aaPredicted RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 TXLNBQ8N3L3 684 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 LRRN4Q8WUT4 740 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 PIH1D2Q8WWB5 315 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 TDRD1Q9BXT4 1180 aaKnown RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 MAK16Q9BXY0 300 aaKnown RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 HAUS2Q9NVX0 235 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 RBM22Q9NW64 420 aaKnown RBP eCLIP16.22■□□□□ 0.191e-6■■■□□ 19
TRIM28-213ENST00000598355 B4GALT6Q9UBX8 382 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 TRIM10Q9UDY6 481 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 EFR3BQ9Y2G0 817 aa16.22■□□□□ 0.19
TRIM28-213ENST00000598355 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 TPRP12270 2363 aaKnown RBP16.22■□□□□ 0.19
TRIM28-213ENST00000598355 KCNK1O00180 336 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 CST8O60676 142 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 PRLP01236 227 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 MMP2P08253 660 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 SHC2P98077 582 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 IL9RQ01113 521 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 NIPAL4Q0D2K0 466 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 FZD2Q14332 565 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 IRF4Q15306 451 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 SLC14A2Q15849 920 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 WSCD2Q2TBF2 565 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 INAVAQ3KP66 663 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 ODF2Q5BJF6 829 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 PRAMEF14Q5SWL7 426 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 KDM7AQ6ZMT4 941 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 CCNYQ8ND76 341 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 CCDC112Q8NEF3 446 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 KIAA1524Q8TCG1 905 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 ALG3Q92685 438 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 TADA1Q96BN2 335 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 HERPUD2Q9BSE4 406 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 MBNL1Q9NR56 388 aaKnown RBP16.21■□□□□ 0.19
TRIM28-213ENST00000598355 TOR4AQ9NXH8 423 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 PHTF1Q9UMS5 762 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 COQ6Q9Y2Z9 468 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 PCDHB9Q9Y5E1 797 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 RAI2Q9Y5P3 530 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 ADGRG1Q9Y653 693 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 CEP295Q9C0D2 2601 aa16.21■□□□□ 0.19
TRIM28-213ENST00000598355 PSMD11O00231 422 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 ARHGAP6O43182 974 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 HEXIM1O94992 359 aaKnown RBP16.2■□□□□ 0.18
TRIM28-213ENST00000598355 PDHA1P08559 390 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 ELFN1P0C7U0 828 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 NME1P15531 152 aaKnown RBP16.2■□□□□ 0.18
TRIM28-213ENST00000598355 LHCGRP22888 699 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 YPEL5P62699 121 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 DYNLT1P63172 113 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 KIF5AQ12840 1032 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 LRRC14Q15048 493 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 TRIP6Q15654 476 aaKnown RBP16.2■□□□□ 0.18
TRIM28-213ENST00000598355 CNGA3Q16281 694 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 ARMC12Q5T9G4 340 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 BZW1Q7L1Q6 419 aaKnown RBP16.2■□□□□ 0.18
TRIM28-213ENST00000598355 PARGQ86W56 976 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 GATAD2AQ86YP4 633 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 SCRN2Q96FV2 425 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 COQ10AQ96MF6 247 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 CDC6Q99741 560 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 CAPN6Q9Y6Q1 641 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 ACACBO00763 2458 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 CHD8Q9HCK8 2581 aa16.2■□□□□ 0.18
TRIM28-213ENST00000598355 PLXNB3Q9ULL4 1909 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 ZFC3H1O60293 1989 aaKnown RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 SPAARA0A1B0GVQ0 90 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 NPIPB15A6NHN6 443 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 APOC4-APOC2K7ER74 178 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 PIAS2O75928 621 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 RECQL5O94762 991 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 JCHAINP01591 159 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 APOC2P02655 101 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 CSF2P04141 144 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 GIMD1P0DJR0 217 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 VIPR1P32241 457 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 RPL26P61254 145 aaKnown RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 SIM1P81133 766 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 SKOR1P84550 965 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 SEMG2Q02383 582 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 BNIP3Q12983 259 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 MTM1Q13496 603 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 MACC1Q6ZN28 852 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 IMP4Q96G21 291 aaKnown RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 QKIQ96PU8 341 aaKnown RBP eCLIP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 LYSMD1Q96S90 227 aa16.19■□□□□ 0.18
TRIM28-213ENST00000598355 SAE1Q9UBE0 346 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 PNMA8BQ9ULN7 279 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 RPL26L1Q9UNX3 145 aaKnown RBP16.19■□□□□ 0.18
TRIM28-213ENST00000598355 A0A0J9YYE9 177 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 MACROD2A1Z1Q3 448 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 CAPN8A6NHC0 703 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 TRBC1P01850 177 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 KCNA4P22459 653 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 NFKBIAP25963 317 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 PTPN3P26045 913 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 RWDD2BP57060 319 aa16.18■□□□□ 0.18
TRIM28-213ENST00000598355 CCZ1BP86790 482 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms