RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 P3H4Q92791 437 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 CENPTQ96BT3 561 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 HAUS1Q96CS2 278 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 CAMK1GQ96NX5 476 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 CEP41Q9BYV8 373 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 B4GALT6Q9UBX8 382 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 PHTF1Q9UMS5 762 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 CAPN6Q9Y6Q1 641 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 SPTBN2O15020 2390 aa13.93□□□□□ -0.18
UPF1-205ENST00000598209 CFAP69A5D8W1 941 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 A8MX80 341 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 YKT6O15498 198 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 FLRT2O43155 660 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 KRT86O43790 486 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 LZTS3O60299 673 aaPredicted RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 PCDHGA12O60330 932 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 ELFN1P0C7U0 828 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 IGFALSP35858 605 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 RABIFP47224 123 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 ARRB1P49407 418 aaPredicted RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 CCZ1BP86790 482 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 CCZ1P86791 482 aaPredicted RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 SUZ12Q15022 739 aaKnown RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 PRKD1Q15139 912 aaPredicted RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 IRF4Q15306 451 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 SHBQ15464 509 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 FAM182AQ5T1J6 154 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 LIPIQ6XZB0 460 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 KDM7AQ6ZMT4 941 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 DBX2Q6ZNG2 339 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 BBS12Q6ZW61 710 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 SLC22A18ASQ8N1D0 253 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 UBL4BQ8N7F7 174 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 SETD7Q8WTS6 366 aaKnown RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 TFB1MQ8WVM0 346 aaKnown RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 AGAP3Q96P47 875 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 OSBPL8Q9BZF1 889 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 MBNL1Q9NR56 388 aaKnown RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 GPR27Q9NS67 375 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 GUCA1BQ9UMX6 200 aa13.92□□□□□ -0.18
UPF1-205ENST00000598209 PACSIN2Q9UNF0 486 aaPredicted RBP13.92□□□□□ -0.18
UPF1-205ENST00000598209 CACNA1AO00555 2505 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 MED19A0JLT2 244 aaPredicted RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 MIF4GDA9UHW6 222 aaKnown RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 APOC4-APOC2K7ER74 178 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 NRDCO43847 1150 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 FZD6O60353 706 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 APOC2P02655 101 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 PDHA1P08559 390 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 PYGMP11217 842 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 CYP2A6P11509 494 aaPredicted RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 CTPS1P17812 591 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 CA4P22748 312 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 NFKBIAP25963 317 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 EPHA8P29322 1005 aaPredicted RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 VIPR1P32241 457 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 PTPN7P35236 360 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 CETN2P41208 172 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 CD86P42081 329 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 RXRGP48443 463 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 PFN3P60673 137 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 LRRC14Q15048 493 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 CCDC181Q5TID7 509 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 AADACL2Q6P093 401 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 ZC3H18Q86VM9 953 aaKnown RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 GATAD2AQ86YP4 633 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 DCP2Q8IU60 420 aaKnown RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 PIH1D2Q8WWB5 315 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 HERPUD2Q9BSE4 406 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 TDRD1Q9BXT4 1180 aaKnown RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 PCOLCE2Q9UKZ9 415 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 CHKBQ9Y259 395 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 EFR3BQ9Y2G0 817 aa13.91□□□□□ -0.18
UPF1-205ENST00000598209 ARID1BQ8NFD5 2236 aaPredicted RBP13.91□□□□□ -0.18
UPF1-205ENST00000598209 NPIPB15A6NHN6 443 aaPredicted RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 DDX3YO15523 660 aaKnown RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 CBFA2T3O75081 653 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 RECQL5O94762 991 aaPredicted RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 HEXIM1O94992 359 aaKnown RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 ITGAVP06756 1048 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 MMP2P08253 660 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 CCDC175P0C221 793 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 PTPN3P26045 913 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 EPHB1P54762 984 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 SKOR1P84550 965 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 BNIP3Q12983 259 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 ZNF211Q13398 564 aaPredicted RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 PDE1CQ14123 709 aaPredicted RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 ACOX1Q15067 660 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 AGERQ15109 404 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 NOMO1Q15155 1222 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 PTPRRQ15256 657 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 CNGA3Q16281 694 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 WSCD2Q2TBF2 565 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 INAVAQ3KP66 663 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 TEX44Q53QW1 395 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 N4BP2L1Q5TBK1 243 aaPredicted RBP13.9□□□□□ -0.18
UPF1-205ENST00000598209 USP45Q70EL2 814 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 NDUFAF2Q8N183 169 aa13.9□□□□□ -0.18
UPF1-205ENST00000598209 RHBDD1Q8TEB9 315 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms