RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 PHEXP78562 749 aa15.33■□□□□ 0.05
UPF1-204ENST00000596842 GALNT2Q10471 571 aa15.33■□□□□ 0.05
UPF1-204ENST00000596842 NCCRP1Q6ZVX7 275 aaPredicted RBP15.33■□□□□ 0.05
UPF1-204ENST00000596842 SLC10A4Q96EP9 437 aa15.33■□□□□ 0.05
UPF1-204ENST00000596842 RSL24D1Q9UHA3 163 aaKnown RBP15.33■□□□□ 0.05
UPF1-204ENST00000596842 SOCS2O14508 198 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 INPP4BO15327 924 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 ANXA9O76027 345 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 CDK4P11802 303 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 NCK1P16333 377 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 ZNF26P17031 533 aaPredicted RBP15.33■□□□□ 0.04
UPF1-204ENST00000596842 CCR1P32246 355 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 CD86P42081 329 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 ECT2LQ008S8 904 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 NSUN2Q08J23 767 aaKnown RBP eCLIP15.33■□□□□ 0.04
UPF1-204ENST00000596842 PFKFB4Q16877 469 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 SREK1IP1Q8N9Q2 155 aaPredicted RBP15.33■□□□□ 0.04
UPF1-204ENST00000596842 BLOC1S5Q8TDH9 187 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 DQX1Q8TE96 717 aaKnown RBP15.33■□□□□ 0.04
UPF1-204ENST00000596842 DDI1Q8WTU0 396 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 ESAMQ96AP7 390 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 MID1IP1Q9NPA3 183 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 UTP6Q9NYH9 597 aaKnown RBP15.33■□□□□ 0.04
UPF1-204ENST00000596842 DERAQ9Y315 318 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 GIPC1O14908 333 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 ANGPT2O15123 496 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 MTHFD1P11586 935 aaKnown RBP15.33■□□□□ 0.04
UPF1-204ENST00000596842 WNT3AP56704 352 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 HPCAP84074 193 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 PLCL1Q15111 1095 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 MAMDC4Q6UXC1 1216 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 FASTKD5Q7L8L6 764 aaKnown RBP15.33■□□□□ 0.04
UPF1-204ENST00000596842 RDH11Q8TC12 318 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 SH3RF2Q8TEC5 729 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 HDAC10Q969S8 669 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 MYLPFQ96A32 169 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 KIFC1Q9BW19 673 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 UNC93B1Q9H1C4 597 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 EML4Q9HC35 981 aaKnown RBP15.33■□□□□ 0.04
UPF1-204ENST00000596842 NSMCE4AQ9NXX6 385 aa15.33■□□□□ 0.04
UPF1-204ENST00000596842 TMX2-CTNND1H3BSU7 103 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 CXCL11O14625 94 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 KDM1AO60341 852 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 PAGE1O75459 146 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 TFPTP0C1Z6 253 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 LINC00032P0C843 101 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 HSPA8P11142 646 aaKnown RBP15.32■□□□□ 0.04
UPF1-204ENST00000596842 CDH2P19022 906 aaPredicted RBP15.32■□□□□ 0.04
UPF1-204ENST00000596842 ARNTP27540 789 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 HSPA13P48723 471 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 OTUD3Q5T2D3 398 aaPredicted RBP15.32■□□□□ 0.04
UPF1-204ENST00000596842 FCRL2Q96LA5 508 aaPredicted RBP15.32■□□□□ 0.04
UPF1-204ENST00000596842 C3orf30Q96M34 536 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 SLC2A13Q96QE2 648 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 GDAP2Q9NXN4 497 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 TCAF1Q9Y4C2 921 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 NEDD8Q15843 81 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 GPC2Q8N158 579 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 TMEM209Q96SK2 561 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 PAIP1Q9H074 479 aaKnown RBP15.32■□□□□ 0.04
UPF1-204ENST00000596842 PPP2R3BQ9Y5P8 575 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 PTGESO14684 152 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 ZNF24P17028 368 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 KPNA2P52292 529 aaKnown RBP15.32■□□□□ 0.04
UPF1-204ENST00000596842 ESRRGP62508 458 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 C3orf58Q8NDZ4 430 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 TRPC4APQ8TEL6 797 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 GIPC3Q8TF64 312 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 HBEGFQ99075 208 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 VTA1Q9NP79 307 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 HSFX1Q9UBD0 423 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 TIMM22Q9Y584 194 aa15.32■□□□□ 0.04
UPF1-204ENST00000596842 NOL3O60936 208 aaKnown RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 H6PDO95479 791 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 OR4Q2P0C623 313 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 GRIK1P39086 918 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 KCNC1P48547 511 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 RHDQ02161 417 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 DCTN2Q13561 401 aaKnown RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 MAPRE2Q15555 327 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 ZIK1Q3SY52 487 aaPredicted RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 CHSY3Q70JA7 882 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 NAT16Q8N8M0 369 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 ZBTB8BQ8NAP8 495 aaPredicted RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 NT5C3BQ969T7 300 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 ISL2Q96A47 359 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 B3GALT6Q96L58 329 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 NSUN5Q96P11 429 aaKnown RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 THEGQ9P2T0 379 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 CLEC11AQ9Y240 323 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 FAM50BQ9Y247 325 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 COMMD10Q9Y6G5 202 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 A0A0J9YYE9 177 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 H3BMM5 538 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 PDHXO00330 501 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 LTA4HP09960 611 aaKnown RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 SCNN1AP37088 669 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 HADHAP40939 763 aa15.31■□□□□ 0.04
UPF1-204ENST00000596842 GABPB2Q8TAK5 448 aaPredicted RBP15.31■□□□□ 0.04
UPF1-204ENST00000596842 GPR152Q8TDT2 470 aa15.31■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms