RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TBC1D3FA6NER0 549 aaPredicted RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3LB9A6J9 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TSPAN6O43657 245 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 USP12O75317 370 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 SUN1O94901 812 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 HEXIM1O94992 359 aaKnown RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 NDST3O95803 873 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 IFNB1P01574 187 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 KRT14P02533 472 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TUBB4AP04350 444 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 WNT1P04628 370 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3HP0C7X1 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 MAGEA6P43360 314 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 LIG3P49916 1009 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 MRPS25P82663 173 aaKnown RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 GALNT3Q14435 633 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TRIP13Q15645 432 aaPredicted RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 SLC1A5Q15758 541 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 CNGA3Q16281 694 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 PCSK7Q16549 785 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 LPAL2Q16609 132 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 PLA2G2CQ5R387 149 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3GQ6DHY5 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3CQ6IPX1 549 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 MICALCLQ6ZW33 695 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 HSD11B1LQ7Z5J1 315 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TECPR1Q7Z6L1 1165 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 HORMAD1Q86X24 394 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 TBC1D3Q8IZP1 549 aaPredicted RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 TTC30BQ8N4P2 665 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 PDCD7Q8N8D1 485 aaKnown RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 TMEM145Q8NBT3 493 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 GANCQ8TET4 914 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 PDCD6IPQ8WUM4 868 aaKnown RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 ASB12Q8WXK4 309 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 KLK6Q92876 244 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 CENPTQ96BT3 561 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 BMFQ96LC9 184 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 NAP1L3Q99457 506 aaPredicted RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 APOL2Q9BQE5 337 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 CAAP1Q9H8G2 361 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 MBNL1Q9NR56 388 aaKnown RBP10.61□□□□□ -0.71
LIG1-210ENST00000596332 COQ6Q9Y2Z9 468 aa10.61□□□□□ -0.71
LIG1-210ENST00000596332 A0A1W2PQ67 120 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 CAPN8A6NHC0 703 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 FAM47DPA6NHR8 397 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 LRRC72A6NJI9 287 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 ZNF189O75820 626 aaPredicted RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 ANXA9O76027 345 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 EPN2O95208 641 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 CLDN7O95471 211 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 AP2A1O95782 977 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 PAK4O96013 591 aaPredicted RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 C1SP09871 688 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 PIRTP0C851 137 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 MAT2AP31153 395 aaKnown RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 VIPR1P32241 457 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 GEMP55040 296 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 POLR2LP62875 67 aaKnown RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 FAM193AP78312 1265 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 SFSWAPQ12872 951 aaKnown RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 SYCP2LQ5T4T6 812 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 ANKRD22Q5VYY1 191 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 ITPRIPL1Q6GPH6 555 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 ARMCX6Q7L4S7 300 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 LPCAT2Q7L5N7 544 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 ASCL5Q7RTU5 278 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 TMC3Q7Z5M5 1100 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 AGGF1Q8N302 714 aaeCLIP10.6□□□□□ -0.71
LIG1-210ENST00000596332 TP53I13Q8NBR0 393 aaPredicted RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 LPCAT1Q8NF37 534 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 IPMKQ8NFU5 416 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 CPT1BQ92523 772 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 SPACA7Q96KW9 195 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 HSPA12BQ96MM6 686 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 LENG8Q96PV6 779 aaPredicted RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 WRAP53Q9BUR4 548 aaKnown RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 FICDQ9BVA6 458 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 SLC17A9Q9BYT1 436 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 MAGEE1Q9HCI5 957 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 DYRK4Q9NR20 520 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 PAK5Q9P286 719 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 EIF2B4Q9UI10 523 aaKnown RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 SMG5Q9UPR3 1016 aaKnown RBP10.6□□□□□ -0.71
LIG1-210ENST00000596332 CA5BQ9Y2D0 317 aa10.6□□□□□ -0.71
LIG1-210ENST00000596332 OTOGLQ3ZCN5 2332 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 ZFHX2Q9C0A1 2572 aaPredicted RBP10.59□□□□□ -0.71
LIG1-210ENST00000596332 LRRK1Q38SD2 2015 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 PRR23AA6NEV1 266 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 PATE3B3GLJ2 98 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 CCDC188H7C350 402 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 GAPDHSO14556 408 aaPredicted RBP10.59□□□□□ -0.71
LIG1-210ENST00000596332 TTI1O43156 1089 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 MAP3K13O43283 966 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 URI1O94763 535 aaPredicted RBP10.59□□□□□ -0.71
LIG1-210ENST00000596332 FSBPO95073 299 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 SOD1P00441 154 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 C6P13671 934 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 PSMA3P25788 255 aa10.59□□□□□ -0.71
LIG1-210ENST00000596332 CD27P26842 260 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms