RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 TAS2R39P59534 338 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 RPL26P61254 145 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 IRF9Q00978 393 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 FAM83EQ2M2I3 478 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 SPRED3Q2MJR0 410 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 FAM45BPQ6NSW5 357 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 CNSTQ6PJW8 725 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 AFTPHQ6ULP2 937 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 LINGO4Q6UY18 593 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 ZYG11AQ6WRX3 759 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 GLT6D1Q7Z4J2 308 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 CMTM8Q8IZV2 173 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 OR6Y1Q8NGX8 325 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 OR4L1Q8NH43 312 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 SHKBP1Q8TBC3 707 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 PIWIL2Q8TC59 973 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 FAM45AQ8TCE6 357 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 DNAJC1Q96KC8 554 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 EXOC2Q96KP1 924 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 TBATAQ96M53 351 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 SAMD11Q96NU1 681 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 TCF12Q99081 682 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 OMDQ99983 421 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 MYLK2Q9H1R3 596 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 RASSF4Q9H2L5 321 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 ECT2Q9H8V3 914 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 KCNK13Q9HB14 408 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 MAN1C1Q9NR34 630 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 CATSPERZQ9NTU4 200 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 INTS10Q9NVR2 710 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 ZNF358Q9NW07 568 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 ZFP69BQ9UJL9 534 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 RPL26L1Q9UNX3 145 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 RUVBL2Q9Y230 463 aaKnown RBP14.24□□□□□ -0.13
LIG3-205ENST00000585941 VPS9D1Q9Y2B5 631 aa14.24□□□□□ -0.13
LIG3-205ENST00000585941 G3V2L1 256 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 PFDN6O15212 129 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 SNUPNO95149 360 aaKnown RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 GOT2P00505 430 aaKnown RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 LPOP22079 712 aaPredicted RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 RASSF2P50749 326 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 ABCE1P61221 599 aaKnown RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 ZBTB16Q05516 673 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 AGAP9Q5VTM2 703 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 LRRC8EQ6NSJ5 796 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 KLC3Q6P597 504 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 ZCCHC23Q6ZST2 131 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 ARID3BQ8IVW6 561 aaPredicted RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 CEP97Q8IW35 865 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 CENPLQ8N0S6 344 aaPredicted RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 LPCAT1Q8NF37 534 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 SH3RF2Q8TEC5 729 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 KCTD4Q8WVF5 259 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 CDKN2AIPNLQ96HQ2 116 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 SCYL1Q96KG9 808 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 C19orf43Q9BQ61 176 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 MRPL57Q9BQC6 102 aaKnown RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 LBHD1Q9BQE6 289 aaPredicted RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 POPDC3Q9HBV1 291 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 ABCB8Q9NUT2 735 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 OXSMQ9NWU1 459 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 HEY2Q9UBP5 337 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 VWA7Q9Y334 891 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 KCTD3Q9Y597 815 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 CCDC162PA2VCL2 907 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 SCAMP3O14828 347 aaKnown RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 UNC5CO95185 931 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 F7P08709 466 aaPredicted RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 GJA1P17302 382 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 GRIA4P48058 902 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 NUMBP49757 651 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 HK2P52789 917 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 ITGA9Q13797 1035 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 TYSND1Q2T9J0 566 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 HECTD2Q5U5R9 776 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 LIPMQ5VYY2 423 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 CES4AQ5XG92 561 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 MFSD6LQ8IWD5 586 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 TNS4Q8IZW8 715 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 TTC16Q8NEE8 873 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 WFDC5Q8TCV5 224 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 CCDC126Q96EE4 140 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 MRPL46Q9H2W6 279 aaKnown RBP14.23□□□□□ -0.13
LIG3-205ENST00000585941 ZDHHC7Q9NXF8 308 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 TBC1D14Q9P2M4 693 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 PCDHGC4Q9Y5F7 938 aa14.23□□□□□ -0.13
LIG3-205ENST00000585941 ZNF197O14709 1029 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 RHOP08100 348 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 TCF3P15923 654 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 PMLP29590 882 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 CCR2P41597 374 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 EPHB1P54762 984 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 NCALDP61601 193 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 LMAN2Q12907 356 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 TRAF2Q12933 501 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 PLEKHG6Q3KR16 790 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 FAM91A1Q658Y4 838 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 CLNKQ7Z7G1 428 aa14.22□□□□□ -0.13
LIG3-205ENST00000585941 MTDHQ86UE4 582 aaKnown RBP14.22□□□□□ -0.13
LIG3-205ENST00000585941 FSTL5Q8N475 847 aaPredicted RBP14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms