RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ZNF576Q9H609 170 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 TRPV4Q9HBA0 871 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 OBP2AQ9NY56 170 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 GDE1Q9NZC3 331 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 FBXO10Q9UK96 956 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 CDH7Q9ULB5 785 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 RIMKLBQ9ULI2 386 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 ERVW-1Q9UQF0 538 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 HS3ST2Q9Y278 367 aa10.57□□□□□ -0.72
SS18-217ENST00000580958 MTO1Q9Y2Z2 717 aaKnown RBP10.57□□□□□ -0.72
SS18-217ENST00000580958 RANBP2P49792 3224 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 PIKFYVEQ9Y2I7 2098 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 CCDC162PA2VCL2 907 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 GMNCA6NCL1 334 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 OR51F1A6NGY5 319 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ANKRD66B4E2M5 251 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 AURKAO14965 403 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 SLC7A4O43246 635 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 HOXC11O43248 304 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 TIMM44O43615 452 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 BNIP3LO60238 219 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 FZD6O60353 706 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 RPP40O75818 363 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 PGLSO95336 258 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ASMTLO95671 621 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 CRTAMO95727 393 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 SLC4A1P02730 911 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ALDOAP04075 364 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 CISD3P0C7P0 127 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 HOXB8P17481 243 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 CTPS1P17812 591 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 POLR2EP19388 210 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 SP100P23497 879 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 GABRB3P28472 473 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 SLC8A1P32418 973 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ABL2P42684 1182 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 MAPK8P45983 427 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 DGKGP49619 791 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 SERPINB8P50452 374 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ZNF140P52738 457 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 EPHB1P54762 984 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 PRAMEP78395 509 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ECT2LQ008S8 904 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ACVR1Q04771 509 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 BCL2L1Q07817 233 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 GRM3Q14832 879 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 TAF1AQ15573 450 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 SEPT7Q16181 437 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 ACCSLQ4AC99 568 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ATAT1Q5SQI0 421 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ZNF470Q6ECI4 717 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 GLT6D1Q7Z4J2 308 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 C12orf40Q86WS4 652 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 AHI1Q8N157 1196 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 NDUFAF2Q8N183 169 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 OTUD6BQ8N6M0 293 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 PCDH20Q8N6Y1 951 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 C2CD4AQ8NCU7 369 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 MDGA1Q8NFP4 955 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 OR2AP1Q8NGE2 309 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 OR13C4Q8NGS5 318 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 WFIKKN2Q8TEU8 576 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 STYXQ8WUJ0 223 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 CYB5D2Q8WUJ1 264 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ISG20Q96AZ6 181 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 VPS39Q96JC1 886 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 TBATAQ96M53 351 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 MYADMQ96S97 322 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 SRPK1Q96SB4 655 aaKnown RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 MCMBPQ9BTE3 642 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 CEP44Q9C0F1 390 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 MFSD1Q9H3U5 465 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 RHOJQ9H4E5 214 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 EBF3Q9H4W6 596 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 CCDC134Q9H6E4 229 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 SUDS3Q9H7L9 328 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 FBXO6Q9NRD1 293 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 MKS1Q9NXB0 559 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 CLEC1BQ9P126 229 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 SLC17A7Q9P2U7 560 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 HECAQ9UBI9 543 aaPredicted RBP10.56□□□□□ -0.72
SS18-217ENST00000580958 SLCO3A1Q9UIG8 710 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 PCDHB9Q9Y5E1 797 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 LRRK1Q38SD2 2015 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 ATG2BQ96BY7 2078 aa10.56□□□□□ -0.72
SS18-217ENST00000580958 TM9SF1O15321 606 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 HTRA2O43464 458 aaPredicted RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 TBX10O75333 385 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 GOT2P00505 430 aaKnown RBP10.55□□□□□ -0.72
SS18-217ENST00000580958 AHSGP02765 367 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 BMP1P13497 986 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 DRD4P21917 467 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 FOXN2P32314 431 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 MAGEA12P43365 314 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 GRIA4P48058 902 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 SLC6A11P48066 632 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 CD151P48509 253 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 IL9RQ01113 521 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 KDSRQ06136 332 aa10.55□□□□□ -0.72
SS18-217ENST00000580958 DLX2Q07687 328 aaPredicted RBP10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms