RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 GLRX5Q86SX6 157 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 GATAD2AQ86YP4 633 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 CAMK1DQ8IU85 385 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 OR13H1Q8NG92 308 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 SLC35G2Q8TBE7 412 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 SAP25Q8TEE9 199 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 RFFLQ8WZ73 363 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 TSC1Q92574 1164 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 MRFAP1L1Q96HT8 127 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 LENG8Q96PV6 779 aaPredicted RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 PSKH2Q96QS6 385 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 WRAP53Q9BUR4 548 aaKnown RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 C1QTNF2Q9BXJ5 285 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 MAK16Q9BXY0 300 aaKnown RBP8.17□□□□□ -1.1
VPS53-214ENST00000572607 KLHL11Q9NVR0 708 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 ATP8A1Q9Y2Q0 1164 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 DOCK4Q8N1I0 1966 aa8.17□□□□□ -1.1
VPS53-214ENST00000572607 LRRD1A4D1F6 860 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 TMEM8BA6NDV4 472 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 NEMP2A6NFY4 417 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 TOR1BO14657 336 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 AREL1O15033 823 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 SPOPO43791 374 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 MAFKO60675 156 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 SOCS5O75159 536 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 MTA2O94776 668 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 LDOC1O95751 146 aaPredicted RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 KRT1P04264 644 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 CD48P09326 243 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 KRT10P13645 584 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 CA4P22748 312 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 TAS2R40P59535 323 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 FAM193AP78312 1265 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 SLC10A7Q0GE19 358 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 PDE1CQ14123 709 aaPredicted RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 NUMA1Q14980 2115 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 PAFAH1B3Q15102 231 aaKnown RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 TMEM52BQ4KMG9 183 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 CCDC157Q569K6 752 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 ANKRD20A8PQ5CZ79 823 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 RALGPS1Q5JS13 557 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 ABI3BPQ7Z7G0 1075 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 PARGQ86W56 976 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 SPATS2Q86XZ4 545 aaKnown RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 RHOT1Q8IXI2 618 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 CCDC170Q8IYT3 715 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 NDUFAF2Q8N183 169 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 EID2Q8N6I1 236 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 BAHD1Q8TBE0 780 aaPredicted RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 FAM71BQ8TC56 605 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 PDCD6IPQ8WUM4 868 aaKnown RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 ADAMTS14Q8WXS8 1223 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 IFT43Q96FT9 208 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 CNDP2Q96KP4 475 aaKnown RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 NUDCD1Q96RS6 583 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 PCDH12Q9NPG4 1184 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 ETNK2Q9NVF9 386 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 DNAJC28Q9NX36 388 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 DDX56Q9NY93 547 aaKnown RBP8.16□□□□□ -1.1
VPS53-214ENST00000572607 GGT7Q9UJ14 662 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 KLK13Q9UKR3 277 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 BTBD3Q9Y2F9 522 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 NEUROG3Q9Y4Z2 214 aa8.16□□□□□ -1.1
VPS53-214ENST00000572607 ASH1LQ9NR48 2969 aaKnown RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 CFAP69A5D8W1 941 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 GOLGA6L6A8MZA4 724 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 ENC1O14682 589 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 APOL1O14791 398 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 HYAL3O43820 417 aaPredicted RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 MFSD11O43934 449 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 SDC3O75056 442 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 CPP00450 1065 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 ELFN1P0C7U0 828 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 VSIG8P0DPA2 414 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 CYP2A6P11509 494 aaPredicted RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 CDK4P11802 303 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 C6P13671 934 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 TNNT1P13805 278 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 ZFXP17010 805 aaPredicted RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 KDELR1P24390 212 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 IL4RP24394 825 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 HTR1BP28222 390 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 MMP12P39900 470 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 GARSP41250 739 aaKnown RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 RGRP47804 291 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 LIG3P49916 1009 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 ARSEP51690 589 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 HNRNPKP61978 463 aaKnown RBP eCLIP8.15□□□□□ -1.1
VPS53-214ENST00000572607 YPEL5P62699 121 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 DAB2P98082 770 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 GALNT2Q10471 571 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 BNIP3Q12983 259 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 FGL2Q14314 439 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 LRRC14Q15048 493 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 SHBQ15464 509 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 IFI16Q16666 785 aaKnown RBP8.15□□□□□ -1.1
VPS53-214ENST00000572607 ATP13A4Q4VNC1 1196 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 LRRC38Q5VT99 294 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 NCBP2-AS2Q69YL0 99 aa8.15□□□□□ -1.1
VPS53-214ENST00000572607 TMTC1Q8IUR5 882 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms