RNA–Protein interactions for RNA: ENST00000569827.5

CAPN3-220, Transcript of calpain 3, humanhuman

TSL 5

Gene CAPN3, Length 908 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-220ENST00000569827 DKK3Q9UBP4 350 aa12.15□□□□□ -0.46
CAPN3-220ENST00000569827 PCDHGA7Q9Y5G6 932 aa12.15□□□□□ -0.46
CAPN3-220ENST00000569827 SPENQ96T58 3664 aaKnown RBP12.15□□□□□ -0.46
CAPN3-220ENST00000569827 UTP20O75691 2785 aaKnown RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 TTC24A2A3L6 582 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 ZSCAN5CA6NGD5 496 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 C9orf172C9J069 976 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 RIOK3O14730 519 aaKnown RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 TNFP01375 233 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 LIPCP11150 499 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 GM2AP17900 193 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 HTR1BP28222 390 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 MLLT3P42568 568 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 PEX5P50542 639 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 CDR2Q01850 454 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 ELP6Q0PNE2 266 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 EIF3IQ13347 325 aaKnown RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 SERINC3Q13530 473 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 CLCA4Q14CN2 919 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 TBR1Q16650 682 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 MAP9Q49MG5 647 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 CERCAMQ5T4B2 595 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 CFAP58Q5T655 872 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 RCBTB1Q8NDN9 531 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 PTCD2Q8WV60 388 aaKnown RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 CENPIQ92674 756 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 NSMCE3Q96MG7 304 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 TMEM74Q96NL1 305 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 RBM15Q96T37 977 aaKnown RBP eCLIP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 SELENOOQ9BVL4 669 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 VPS16Q9H269 839 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 CYP4F12Q9HCS2 524 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 SEPT11Q9NVA2 429 aaKnown RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 UBA2Q9UBT2 640 aaPredicted RBP12.14□□□□□ -0.47
CAPN3-220ENST00000569827 IL17BQ9UHF5 180 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 ATP8A1Q9Y2Q0 1164 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 MFHAS1Q9Y4C4 1052 aa12.14□□□□□ -0.47
CAPN3-220ENST00000569827 TSPAN11A1L157 253 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 TERTO14746 1132 aaKnown RBP12.13□□□□□ -0.47
CAPN3-220ENST00000569827 TEX33O43247 280 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 RECQL5O94762 991 aaPredicted RBP12.13□□□□□ -0.47
CAPN3-220ENST00000569827 KRT3P12035 628 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 UNGP13051 313 aaPredicted RBP12.13□□□□□ -0.47
CAPN3-220ENST00000569827 CCL4P13236 92 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 CSRP3P50461 194 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 OR1D5P58170 312 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 RPL7AP62424 266 aaKnown RBP12.13□□□□□ -0.47
CAPN3-220ENST00000569827 MTM1Q13496 603 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 C14orf28Q4W4Y0 310 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 EFHC2Q5JST6 749 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 SPECC1LQ69YQ0 1117 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 LVRNQ6Q4G3 990 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 ARHGAP36Q6ZRI8 547 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 DNAAF5Q86Y56 855 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 PTRH1Q86Y79 214 aaKnown RBP12.13□□□□□ -0.47
CAPN3-220ENST00000569827 SLITRK4Q8IW52 837 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 PAF1Q8N7H5 531 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 TSEN2Q8NCE0 465 aaKnown RBP12.13□□□□□ -0.47
CAPN3-220ENST00000569827 PATE1Q8WXA2 126 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 NTAN1Q96AB6 310 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 MCEEQ96PE7 176 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 DPEP2Q9H4A9 486 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 PDFQ9HBH1 243 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 STARD5Q9NSY2 213 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 ADAM22Q9P0K1 906 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 LRIT1Q9P2V4 623 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 FZD10Q9ULW2 581 aa12.13□□□□□ -0.47
CAPN3-220ENST00000569827 TNRC6AQ8NDV7 1962 aaKnown RBP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 SPTAN1Q13813 2472 aaKnown RBP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 CXorf51AA0A1B0GTR3 108 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 B4GAT1O43505 415 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 GLB1P16278 677 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 MPSTP25325 297 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 AK4P27144 223 aaPredicted RBP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 SOX5P35711 763 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 NSFP46459 744 aaKnown RBP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 ARSDP51689 593 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 JAM2P57087 298 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 TPI1P60174 286 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 OGDHQ02218 1023 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 ZFP36L1Q07352 338 aaKnown RBP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 ARHGEF7Q14155 803 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 HLTFQ14527 1009 aaKnown RBP eCLIP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 PTPRRQ15256 657 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 CA9Q16790 459 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 INO80DQ53TQ3 878 aaPredicted RBP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 TCP11X2Q5H9J9 407 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 COLEC12Q5KU26 742 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 DENND2CQ68D51 928 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 ERAP2Q6P179 960 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 TP53INP2Q8IXH6 220 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 OR56A4Q8NGH8 313 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 RNF31Q96EP0 1072 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 NUDT22Q9BRQ3 303 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 FUCA2Q9BTY2 467 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 SLC39A8Q9C0K1 460 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 SPATS2LQ9NUQ6 558 aaKnown RBP12.12□□□□□ -0.47
CAPN3-220ENST00000569827 ACSL6Q9UKU0 697 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 DGKBQ9Y6T7 804 aa12.12□□□□□ -0.47
CAPN3-220ENST00000569827 SPTBN1Q01082 2364 aaKnown RBP12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms