RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 PSMG1O95456 288 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 IRF1P10914 325 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 HK2P52789 917 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 DNAJB13P59910 316 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 TLE2Q04725 743 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 KLF10Q13118 480 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 PLD1Q13393 1074 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 RCN1Q15293 331 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 LSM12Q3MHD2 195 aaKnown RBP20.35■□□□□ 0.85
CLN3-230ENST00000568076 RALGPS1Q5JS13 557 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 AGAP9Q5VTM2 703 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 ZNF549Q6P9A3 640 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 TMCO2Q7Z6W1 182 aaPredicted RBP20.35■□□□□ 0.85
CLN3-230ENST00000568076 PIM3Q86V86 326 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 LMNTD2Q8IXW0 634 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 KDM1BQ8NB78 822 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 PDCD6IPQ8WUM4 868 aaKnown RBP20.35■□□□□ 0.85
CLN3-230ENST00000568076 CMTM5Q96DZ9 223 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 TSPAN17Q96FV3 270 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 ZNF570Q96NI8 536 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 CINPQ9BW66 212 aaPredicted RBP20.35■□□□□ 0.85
CLN3-230ENST00000568076 CRYL1Q9Y2S2 319 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 LOC100653049A0A140TA62 436 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 TSPAN3O60637 253 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 KRT34O76011 436 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 NDST3O95803 873 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 SOD2P04179 222 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 CR2P20023 1033 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 PTDSS1P48651 473 aaKnown RBP20.35■□□□□ 0.85
CLN3-230ENST00000568076 HTRA3P83110 453 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 TRIM60Q495X7 471 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 FSCBQ5H9T9 825 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 FRMD7Q6ZUT3 714 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 NET1Q7Z628 596 aaPredicted RBP20.35■□□□□ 0.85
CLN3-230ENST00000568076 PEX13Q92968 403 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 PANX3Q96QZ0 392 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 KLF16Q9BXK1 252 aaPredicted RBP20.35■□□□□ 0.85
CLN3-230ENST00000568076 SPO11Q9Y5K1 396 aa20.35■□□□□ 0.85
CLN3-230ENST00000568076 ILVBLA1L0T0 632 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 A8MT66 165 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 TMEM233B4DJY2 109 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 CD3EAPO15446 510 aaKnown RBP20.34■□□□□ 0.85
CLN3-230ENST00000568076 RPP40O75818 363 aaKnown RBP20.34■□□□□ 0.85
CLN3-230ENST00000568076 ZMPSTE24O75844 475 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 PARNO95453 639 aaKnown RBP20.34■□□□□ 0.85
CLN3-230ENST00000568076 GLP2RO95838 553 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 RHOCP08134 193 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 MNX1P50219 401 aaPredicted RBP20.34■□□□□ 0.85
CLN3-230ENST00000568076 SCNN1BP51168 640 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 TIAL1Q01085 375 aaKnown RBP eCLIP20.34■□□□□ 0.85
CLN3-230ENST00000568076 ASPHQ12797 758 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 CYTH1Q15438 398 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 ADGRF1Q5T601 910 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 C16orf59Q7L2K0 433 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 PIWIL4Q7Z3Z4 852 aaKnown RBP20.34■□□□□ 0.85
CLN3-230ENST00000568076 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.34■□□□□ 0.85
CLN3-230ENST00000568076 BBS5Q8N3I7 341 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 GPR150Q8NGU9 434 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 RNF208Q9H0X6 261 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 CYP4F12Q9HCS2 524 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 NCKIPSDQ9NZQ3 722 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 HSFX1Q9UBD0 423 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP20.34■□□□□ 0.85
CLN3-230ENST00000568076 PRLP01236 227 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 COX4I1P13073 169 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 PRDX6P30041 224 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 DSG1Q02413 1049 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 ZNF177Q13360 481 aaPredicted RBP20.34■□□□□ 0.85
CLN3-230ENST00000568076 IKBKEQ14164 716 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 ACAP2Q15057 778 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 GPR158Q5T848 1215 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 RIPOR1Q6ZS17 1223 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 CHST9Q7L1S5 443 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 VTI1BQ9UEU0 232 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 TBC1D30Q9Y2I9 924 aa20.34■□□□□ 0.85
CLN3-230ENST00000568076 F8W8V4 182 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 SLCO1B7G3V0H7 640 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 INSIG1O15503 277 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 TBX10O75333 385 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 PRSS56P0CW18 603 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 CCL5P13501 91 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 HNRNPLP14866 589 aaKnown RBP eCLIP20.33■□□□□ 0.84
CLN3-230ENST00000568076 ALDH1A3P47895 512 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 KCNC1P48547 511 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 LAMB3Q13751 1172 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 PDCD2Q16342 344 aaPredicted RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 TRMT5Q32P41 509 aaKnown RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 TPGS2Q68CL5 300 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 CXorf57Q6NSI4 855 aaKnown RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 RPS27LQ71UM5 84 aaKnown RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 SETD3Q86TU7 594 aaPredicted RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 SCG3Q8WXD2 468 aaKnown RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 TRMT2BQ96GJ1 504 aaKnown RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 LENG8Q96PV6 779 aaPredicted RBP20.33■□□□□ 0.84
CLN3-230ENST00000568076 SMIM14Q96QK8 99 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 ZNF385DQ9H6B1 395 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 RIMKLBQ9ULI2 386 aa20.33■□□□□ 0.84
CLN3-230ENST00000568076 A0A1B0GVM2 712 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 TCAF2A6NFQ2 919 aa20.32■□□□□ 0.84
CLN3-230ENST00000568076 CBX4O00257 560 aa20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms