RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-215	ENST00000565442	GABPB2	Q8TAK5	448 aa	Predicted RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	BICD2	Q8TD16	824 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	LPAR1	Q92633	364 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	FAM149B1	Q96BN6	582 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	APOLD1	Q96LR9	279 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	TREX2	Q9BQ50	279 aa	Predicted RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	MSTO1	Q9BUK6	570 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	GHITM	Q9H3K2	345 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	PLEKHA4	Q9H4M7	779 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	POLR1B	Q9H9Y6	1135 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	MAGEE1	Q9HCI5	957 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	FBRSL1	Q9HCM7	1045 aa	Known RBP	4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	ZBTB40	Q9NUA8	1239 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	HAUS2	Q9NVX0	235 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	ANKRD10	Q9NXR5	420 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	PLK2	Q9NYY3	685 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	EHD2	Q9NZN4	543 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	SLCO3A1	Q9UIG8	710 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	ADAM18	Q9Y3Q7	739 aa		4.62	□□□□□ -1.67
CHD9-215	ENST00000565442	LY6G6E	A0A0G2JKS1	128 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442		A0A1W2PQF6	199 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	DYTN	A2CJ06	578 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	LIPT2	A6NK58	231 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	ERVV-2	B6SEH9	535 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442		I6L893	689 aa	Predicted RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	LDB2	O43679	373 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	PAGE4	O60829	102 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	EIF2S1	P05198	315 aa	Known RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	KRT10	P13645	584 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	ETFA	P13804	333 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	IL7R	P16871	459 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	CDA	P32320	146 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	PPARG	P37231	505 aa	Predicted RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	HADHA	P40939	763 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	FOXD4	Q12950	439 aa	Predicted RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	MEA1	Q16626	185 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	TCTN1	Q2MV58	587 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	HIST2H2BC	Q6DN03	193 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	HIST2H2BD	Q6DRA6	164 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	NCEH1	Q6PIU2	408 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	CCDC129	Q6ZRS4	1044 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442		Q6ZTK2	550 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	GSTA5	Q7RTV2	222 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	SLC35F3	Q8IY50	421 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	MB21D2	Q8IYB1	491 aa	Predicted RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	C7orf57	Q8NEG2	295 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	ARHGEF2	Q92974	986 aa	Known RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	MMAB	Q96EY8	250 aa	Predicted RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	MAP7D2	Q96T17	732 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	STRA6	Q9BX79	667 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	ASAH2	Q9NR71	780 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	SMYD2	Q9NRG4	433 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	CYSLTR2	Q9NS75	346 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	POT1	Q9NUX5	634 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	HCFC1R1	Q9NWW0	138 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	SWAP70	Q9UH65	585 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	GPR34	Q9UPC5	381 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	AAR2	Q9Y312	384 aa	Known RBP	4.61	□□□□□ -1.67
CHD9-215	ENST00000565442	LYVE1	Q9Y5Y7	322 aa		4.61	□□□□□ -1.67
CHD9-215	ENST00000565442		A6NCN8	305 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	BECN2	A8MW95	431 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	KDM4E	B2RXH2	506 aa	Predicted RBP	4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	GTPBP1	O00178	669 aa	Known RBP	4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	TAF4	O00268	1085 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	CYP1A2	P05177	515 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	AGA	P20933	346 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	SHMT1	P34896	483 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	ENTPD1	P49961	510 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	RASSF2	P50749	326 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	CLNS1A	P54105	237 aa	Known RBP	4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	PMS2	P54278	862 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	F2RL1	P55085	397 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	SORD	Q00796	357 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	CSTF3	Q12996	717 aa	Known RBP	4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	TRAF1	Q13077	416 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	PDE1C	Q14123	709 aa	Predicted RBP	4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	TWIST1	Q15672	202 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	ZNF284	Q2VY69	593 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	SGO1	Q5FBB7	561 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	SPATA1	Q5VX52	437 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	KLHL35	Q6PF15	583 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	TRIL	Q7L0X0	811 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	ZNF367	Q7RTV3	350 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	WDTC1	Q8N5D0	677 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	MIGA1	Q8NAN2	632 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	SNAPC3	Q92966	411 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	FBXL8	Q96CD0	374 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	VCPIP1	Q96JH7	1222 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	CATSPERB	Q9H7T0	1116 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	DDX4	Q9NQI0	724 aa	Known RBP	4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	ABI3	Q9P2A4	366 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	CNOT8	Q9UFF9	292 aa	Known RBP	4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	TBC1D29	Q9UFV1	150 aa		4.6	□□□□□ -1.67
CHD9-215	ENST00000565442	PTGES3L	E9PB15	166 aa		4.59	□□□□□ -1.67
CHD9-215	ENST00000565442	UTY	O14607	1347 aa		4.59	□□□□□ -1.67
CHD9-215	ENST00000565442	MTA2	O94776	668 aa		4.59	□□□□□ -1.67
CHD9-215	ENST00000565442	NKX2-2	O95096	273 aa		4.59	□□□□□ -1.67
CHD9-215	ENST00000565442	OAZ2	O95190	189 aa		4.59	□□□□□ -1.67
CHD9-215	ENST00000565442	ALPL	P05186	524 aa		4.59	□□□□□ -1.67
CHD9-215	ENST00000565442	TMEM191B	P0C7N4	346 aa		4.59	□□□□□ -1.67

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms