RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 MTM1Q13496 603 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 STIM1Q13586 685 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 TRA2AQ13595 282 aaKnown RBP eCLIP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 PKP1Q13835 747 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 CLPPQ16740 277 aaPredicted RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 RWDD4Q6NW29 188 aaKnown RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 FOXR2Q6PJQ5 311 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 UNC5BQ8IZJ1 945 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 NLGN4XQ8N0W4 816 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 NETO2Q8NC67 525 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF397Q8NF99 534 aaPredicted RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 NLGN4YQ8NFZ3 816 aaPredicted RBP7.37□□□□□ -1.23
VPS4A-203ENST00000564399 CCL4L1Q8NHW4 92 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 ZDHHC1Q8WTX9 485 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 HMCESQ96FZ2 354 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 CEP63Q96MT8 703 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 TBCBQ99426 244 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 NCAPGQ9BPX3 1015 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 DDA1Q9BW61 102 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 FGF22Q9HCT0 170 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 PRDM8Q9NQV8 689 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 OCIAD1Q9NX40 245 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 DKK3Q9UBP4 350 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF212Q9UDV6 495 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 DNAI1Q9UI46 699 aa7.37□□□□□ -1.23
VPS4A-203ENST00000564399 LOC101059948A0A1B0GTJ6 334 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 FAM237AA0A1B0GTK4 181 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 CXorf51AA0A1B0GTR3 108 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 TNFRSF10CO14798 259 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 TMCC1O94876 653 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 MAP4P27816 1152 aaKnown RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 CD1CP29017 333 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 KRT9P35527 623 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 MAPKAPK2P49137 400 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 LIG3P49916 1009 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 SUOXP51687 545 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 RAB15P59190 212 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 KIAA1024LP59773 190 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 KRT85P78386 507 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 UGP2Q16851 508 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 TSR1Q2NL82 804 aaKnown RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 SLC25A52Q3SY17 297 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PTPN20Q4JDL3 420 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 COBLL1Q53SF7 1204 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 CFAP58Q5T655 872 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 FAM102AQ5T9C2 384 aaPredicted RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 ATP1A1-AS1Q5TC04 95 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 NKAIN2Q5VXU1 208 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 ANKS6Q68DC2 871 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 ZNF787Q6DD87 383 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 CAPRIN2Q6IMN6 1127 aaKnown RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 TCTN3Q6NUS6 607 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 ERAP2Q6P179 960 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 GJB7Q6PEY0 223 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 ASB18Q6ZVZ8 466 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 ENOSF1Q7L5Y1 443 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 FAM131BQ86XD5 332 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 ZDHHC17Q8IUH5 632 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 CCDC13Q8IYE1 715 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PAF1Q8N7H5 531 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PLA2G15Q8NCC3 412 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 GALNT11Q8NCW6 608 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 OR4D9Q8NGE8 314 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 STARD8Q92502 1023 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 FUBP1Q96AE4 644 aaKnown RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PGAP3Q96FM1 320 aaPredicted RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 GSDMAQ96QA5 445 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 TEFMQ96QE5 360 aaKnown RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 CRACR2AQ9BSW2 395 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 TTYH3Q9C0H2 523 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 MAGEH1Q9H213 219 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PDCL3Q9H2J4 239 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 GOLPH3LQ9H4A5 285 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PCDH12Q9NPG4 1184 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 SPATS2LQ9NUQ6 558 aaKnown RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 NDFIP2Q9NV92 336 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 TMEM51Q9NW97 253 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PPARGC1AQ9UBK2 798 aaKnown RBP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PILRAQ9UKJ1 303 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 PCDHGC3Q9UN70 934 aa7.36□□□□□ -1.23
VPS4A-203ENST00000564399 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.36□□□□□ -1.23
VPS4A-203ENST00000564399 LRBAP50851 2863 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 FAM170AA1A519 330 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 ZSCAN5CA6NGD5 496 aaPredicted RBP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 A8MU76 341 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 BECN2A8MW95 431 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 B4E171 279 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 GOLGA8SH3BPF8 625 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 K7EM74 188 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 PDE2AO00408 941 aaPredicted RBP7.35□□□□□ -1.23
VPS4A-203ENST00000564399 INSIG1O15503 277 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 TEX33O43247 280 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 KDELR3O43731 214 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 RAMP2O60895 175 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 SEMA7AO75326 666 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 SMC2O95347 1197 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 PIGNO95427 931 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 ECEL1O95672 775 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 PRKCGP05129 697 aa7.35□□□□□ -1.23
VPS4A-203ENST00000564399 FGF1P05230 155 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms