RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 C3orf70A6NLC5 250 aaPredicted RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 C9IYK1 514 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 CCRL2O00421 344 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 NRP1O14786 923 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 TREHO43280 583 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 DDHD2O94830 711 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 GLDCP23378 1020 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 PTPN7P35236 360 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 TMBIM6P55061 237 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 SPCS2Q15005 226 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 GOLGA7BQ2TAP0 167 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 CYP4V2Q6ZWL3 525 aaPredicted RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 DEPDC4Q8N2C3 294 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 CBR4Q8N4T8 237 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 ZFP90Q8TF47 636 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 TMEM40Q8WWA1 233 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 MCRS1Q96EZ8 462 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 PIWIL1Q96J94 861 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 NPAS2Q99743 824 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 MRPL45Q9BRJ2 306 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 UPF3AQ9H1J1 476 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 FAM96AQ9H5X1 160 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 FANCEQ9HB96 536 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 HMG20AQ9NP66 347 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 PNPLA8Q9NP80 782 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 FAM49BQ9NUQ9 324 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 THG1LQ9NWX6 298 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 ZNF229Q9UJW7 825 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 CNOT6Q9ULM6 557 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 PIN4Q9Y237 131 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 CST8O60676 142 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 KRT7P08729 469 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 AKAP5P24588 427 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 RGS7P49802 495 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 YWHAZP63104 245 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 HADHQ16836 314 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 PPP4R4Q6NUP7 873 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 LCLAT1Q6UWP7 414 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 ACOT1Q86TX2 421 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 PDPRQ8NCN5 879 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 LSM14AQ8ND56 463 aaKnown RBP13.37□□□□□ -0.27
CLK3-206ENST00000562078 CYGBQ8WWM9 190 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 SNX19Q92543 992 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 PLEKHA5Q9HAU0 1116 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 AKIP1Q9NQ31 210 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 TCF7L2Q9NQB0 619 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 SCN10AQ9Y5Y9 1956 aa13.37□□□□□ -0.27
CLK3-206ENST00000562078 E2F8A0AVK6 867 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 SCO2O43819 266 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 PLIN3O60664 434 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 TMCC2O75069 709 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 ADAMTS4O75173 837 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 DDX5P17844 614 aaKnown RBP13.36□□□□□ -0.27
CLK3-206ENST00000562078 OCA2Q04671 838 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 TAF5Q15542 800 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 CRY1Q16526 586 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 OR6B2Q6IFH4 312 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 FAM183BPQ6ZVS7 135 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 DCP2Q8IU60 420 aaKnown RBP13.36□□□□□ -0.27
CLK3-206ENST00000562078 RP9Q8TA86 221 aaKnown RBP13.36□□□□□ -0.27
CLK3-206ENST00000562078 CDK5RAP1Q96SZ6 601 aaKnown RBP13.36□□□□□ -0.27
CLK3-206ENST00000562078 BEGAINQ9BUH8 593 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 SAGE1Q9NXZ1 904 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 SLC17A6Q9P2U8 582 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 SATB2Q9UPW6 733 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 DERAQ9Y315 318 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 B4GAT1O43505 415 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 GRAP2O75791 330 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 PFKMP08237 780 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 CDH1P12830 882 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 PRKCHP24723 683 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 MIPP30301 263 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 NME5P56597 212 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 RHDQ02161 417 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 MERTKQ12866 999 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 AQP6Q13520 282 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 SNX17Q15036 470 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 PCSK7Q16549 785 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.36□□□□□ -0.27
CLK3-206ENST00000562078 PPP1R26Q5T8A7 1209 aaPredicted RBP13.36□□□□□ -0.27
CLK3-206ENST00000562078 TMEM198Q66K66 360 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 TRNP1Q6NT89 227 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 BEST2Q8NFU1 509 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 PXYLP1Q8TE99 480 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 HTRA1Q92743 480 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 ASB9Q96DX5 294 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 POPDC2Q9HBU9 364 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 KLK14Q9P0G3 267 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 NME7Q9Y5B8 376 aa13.36□□□□□ -0.27
CLK3-206ENST00000562078 HCRTO43612 131 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 ALX3O95076 343 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 PRKCGP05129 697 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 ASGR1P07306 291 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 RALBP11234 206 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 SERPINB1P30740 379 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 HARS2P49590 506 aaKnown RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 P2RX3P56373 397 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 RACK1P63244 317 aaKnown RBP13.35□□□□□ -0.27
CLK3-206ENST00000562078 CDC42EP1Q00587 391 aa13.35□□□□□ -0.27
CLK3-206ENST00000562078 RALGDSQ12967 914 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 309.3 ms