RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 TP73O15350 636 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 AP1G1O43747 822 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 MMP20O60882 483 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TMEM63AO94886 807 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 SUN1O94901 812 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3HP0C7X1 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 CA4P22748 312 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 ADCY8P40145 1251 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 GRIA4P48058 902 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 EPHB1P54762 984 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 SLC7A5Q01650 507 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 FGL2Q14314 439 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TRADDQ15628 312 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TMEM52BQ4KMG9 183 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3GQ6DHY5 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3CQ6IPX1 549 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 CRTC1Q6UUV9 634 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 SYDE1Q6ZW31 735 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-227ENST00000557269 ZNF534Q76KX8 674 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 DPPA4Q7L190 304 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TMEFF1Q8IYR6 380 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TBC1D3Q8IZP1 549 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-227ENST00000557269 CEP112Q8N8E3 955 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 MNS1Q8NEH6 495 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 OR52K1Q8NGK4 314 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 RAB7BQ96AH8 199 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 EID2BQ96D98 161 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 PPP1R2P1Q96PQ5 205 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 TRIM31Q9BZY9 425 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 LRRC40Q9H9A6 602 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 EBF2Q9HAK2 575 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 ASIC3Q9UHC3 531 aa12.87□□□□□ -0.35
SHMT2-227ENST00000557269 PLXND1Q9Y4D7 1925 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 A0A1W2PQU0 124 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 FAM187AA6NFU0 413 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 IGLON5A6NGN9 336 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 CAPN8A6NHC0 703 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 GOLGA8CPA6NN73 597 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 PSMD3O43242 534 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 MAP3K13O43283 966 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 TSPAN6O43657 245 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 RNGTTO60942 597 aaKnown RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 PCDH8O95206 1070 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 IGHV4-34P06331 123 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 TPH1P17752 444 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 GM2AP17900 193 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 MAT2AP31153 395 aaKnown RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 VIPR1P32241 457 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 MAGEA6P43360 314 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 RPL21P46778 160 aaKnown RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 LMAN1P49257 510 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 LIG3P49916 1009 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 SUOXP51687 545 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 RPL6Q02878 288 aaKnown RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 CCDC15Q0P6D6 951 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 SFSWAPQ12872 951 aaKnown RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 MTM1Q13496 603 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 CNGA3Q16281 694 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 RNASEH2BQ5TBB1 312 aaKnown RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 KIAA0895LQ68EN5 471 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 ERAP2Q6P179 960 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 LIPIQ6XZB0 460 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 RFLNAQ6ZTI6 216 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 SLC41A1Q8IVJ1 513 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 CBARPQ8N350 705 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 NAT8LQ8N9F0 302 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 OR2T34Q8NGX1 318 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 KLK6Q92876 244 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 SPACA7Q96KW9 195 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 DUSP15Q9H1R2 295 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 ARNT2Q9HBZ2 717 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 PREBQ9HCU5 417 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 CASS4Q9NQ75 786 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 EIF2B3Q9NR50 452 aaKnown RBP12.86□□□□□ -0.35
SHMT2-227ENST00000557269 SHOC2Q9UQ13 582 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 COQ6Q9Y2Z9 468 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 SNX24Q9Y343 169 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 PCDHGA2Q9Y5H1 932 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 SLCO1B1Q9Y6L6 691 aa12.86□□□□□ -0.35
SHMT2-227ENST00000557269 GOLGA6CA6NDK9 693 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 GOLGA6BA6NDN3 693 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 LRRC72A6NJI9 287 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ERI2A8K979 691 aaKnown RBP12.85□□□□□ -0.35
SHMT2-227ENST00000557269 METTL12A8MUP2 240 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 EFCAB8A8MWE9 144 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 GOLGA8MH3BSY2 632 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 NEMP1O14524 444 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 DNALI1O14645 258 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-227ENST00000557269 NDUFS2O75306 463 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 AVILO75366 819 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 HEXIM1O94992 359 aaKnown RBP12.85□□□□□ -0.35
SHMT2-227ENST00000557269 CLDN7O95471 211 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 FGF1P05230 155 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 C1SP09871 688 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 GOLGA6DP0CG33 693 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 HLA-DPA1P20036 260 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 TPSB2P20231 275 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 PTGER3P43115 390 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 PTSQ03393 145 aa12.85□□□□□ -0.35
SHMT2-227ENST00000557269 ELP6Q0PNE2 266 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms