RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 COPB2P35606 906 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 EIF3BP55884 814 aaKnown RBP5.19□□□□□ -1.58
SCFD1-211ENST00000554437 KRTAP10-9P60411 292 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 LTBQ06643 244 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 GSTA3Q16772 222 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 SHFQ7M4L6 423 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 CCDC89Q8N998 374 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 NEXN-AS1Q8NBZ9 246 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 RFFLQ8WZ73 363 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 PHF21BQ96EK2 531 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 FBXO2Q9UK22 296 aaPredicted RBP5.19□□□□□ -1.58
SCFD1-211ENST00000554437 AGO1Q9UL18 857 aaKnown RBP5.19□□□□□ -1.58
SCFD1-211ENST00000554437 SLC45A1Q9Y2W3 748 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 NFE2L3Q9Y4A8 694 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 KDM3AQ9Y4C1 1321 aa5.19□□□□□ -1.58
SCFD1-211ENST00000554437 LINC01553A4QN01 128 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 USP17L23D6RBM5 183 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 SEC14L5O43304 696 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 RNASEH2AO75792 299 aaKnown RBP5.18□□□□□ -1.58
SCFD1-211ENST00000554437 CH25HO95992 272 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 ITGAXP20702 1163 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 AGAP20933 346 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 ITGB8P26012 769 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 CHATP28329 748 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 CCKARP32238 428 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 SHMT1P34896 483 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 CCR9P51686 369 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 MPP1Q00013 466 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 NEDD9Q14511 834 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 HLFQ16534 295 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 FBXO46Q6PJ61 603 aaPredicted RBP5.18□□□□□ -1.58
SCFD1-211ENST00000554437 LCTLQ6UWM7 567 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 CCDC129Q6ZRS4 1044 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 SCCPDHQ8NBX0 429 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 METTL6Q8TCB7 284 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 FAM216AQ8WUB2 273 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 SKA1Q96BD8 255 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 PABPC5Q96DU9 382 aaKnown RBP5.18□□□□□ -1.58
SCFD1-211ENST00000554437 MPP4Q96JB8 637 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 LRFN5Q96NI6 719 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 PLEKHA4Q9H4M7 779 aa5.18□□□□□ -1.58
SCFD1-211ENST00000554437 PRKRIP1Q9H875 184 aaPredicted RBP5.18□□□□□ -1.58
SCFD1-211ENST00000554437 TAF4O00268 1085 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 HSPA12AO43301 675 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 MBD4O95243 580 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 MMP2P08253 660 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 CD58P19256 250 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 TKTP29401 623 aaKnown RBP5.17□□□□□ -1.58
SCFD1-211ENST00000554437 DDIT3P35638 169 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 ZXDBP98169 803 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 TSTQ16762 297 aaKnown RBP5.17□□□□□ -1.58
SCFD1-211ENST00000554437 SGO1Q5FBB7 561 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 EFHC1Q5JVL4 640 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 NEK10Q6ZWH5 1172 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 SPATA2LQ8IUW3 424 aaPredicted RBP5.17□□□□□ -1.58
SCFD1-211ENST00000554437 SLC35F3Q8IY50 421 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 DIS3L2Q8IYB7 885 aaKnown RBP5.17□□□□□ -1.58
SCFD1-211ENST00000554437 CLIP4Q8N3C7 705 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 BEST2Q8NFU1 509 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 KCNG4Q8TDN1 519 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 TMED6Q8WW62 240 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 MED30Q96HR3 178 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 NAP1L5Q96NT1 182 aaPredicted RBP5.17□□□□□ -1.58
SCFD1-211ENST00000554437 MMTAG2Q9BU76 263 aaKnown RBP5.17□□□□□ -1.58
SCFD1-211ENST00000554437 BRF2Q9HAW0 419 aa5.17□□□□□ -1.58
SCFD1-211ENST00000554437 DDX4Q9NQI0 724 aaKnown RBP5.17□□□□□ -1.58
SCFD1-211ENST00000554437 ZIC3O60481 467 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 TBX18O95935 607 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 CD4P01730 458 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 SPARCP09486 303 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 GPTP24298 496 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 TNFRSF8P28908 595 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 RARSP54136 660 aaKnown RBP5.16□□□□□ -1.58
SCFD1-211ENST00000554437 SORDQ00796 357 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 TRAF3Q13114 568 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 DCTN2Q13561 401 aaKnown RBP5.16□□□□□ -1.58
SCFD1-211ENST00000554437 ERV3-1Q14264 604 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 MMEL1Q495T6 779 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 HYIQ5T013 277 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 CDC73Q6P1J9 531 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 CPLX4Q7Z7G2 160 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 ZC3HC1Q86WB0 502 aaKnown RBP5.16□□□□□ -1.58
SCFD1-211ENST00000554437 ZBTB2Q8N680 514 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 GTF3C6Q969F1 213 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 PIP5K1AQ99755 562 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 TKTL2Q9H0I9 626 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 RANBP17Q9H2T7 1088 aaKnown RBP5.16□□□□□ -1.58
SCFD1-211ENST00000554437 OCIAD1Q9NX40 245 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 CDC14AQ9UNH5 594 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 AAR2Q9Y312 384 aaKnown RBP5.16□□□□□ -1.58
SCFD1-211ENST00000554437 UTYO14607 1347 aa5.16□□□□□ -1.58
SCFD1-211ENST00000554437 CLEC18AA5D8T8 446 aa5.15□□□□□ -1.59
SCFD1-211ENST00000554437 NPIPB15A6NHN6 443 aaPredicted RBP5.15□□□□□ -1.59
SCFD1-211ENST00000554437 B4E171 279 aa5.15□□□□□ -1.59
SCFD1-211ENST00000554437 EIF3CLB5ME19 914 aaKnown RBP5.15□□□□□ -1.59
SCFD1-211ENST00000554437 WNT9BO14905 357 aa5.15□□□□□ -1.59
SCFD1-211ENST00000554437 SLC28A2O43868 658 aa5.15□□□□□ -1.59
SCFD1-211ENST00000554437 SEC14L2O76054 403 aa5.15□□□□□ -1.59
SCFD1-211ENST00000554437 PAPSS2O95340 614 aaPredicted RBP5.15□□□□□ -1.59
SCFD1-211ENST00000554437 FCGR1AP12314 374 aa5.15□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms