RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 HDAC4P56524 1084 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 PRDM15P57071 1507 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 MAP3K1Q13233 1512 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 MED22Q15528 200 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 INPP5JQ15735 1006 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 Q4G0T1 1027 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 ZC3H13Q5T200 1668 aaKnown RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 AHDC1Q5TGY3 1603 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 MORN5Q5VZ52 161 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 ZKSCAN2Q63HK3 967 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 HEPHL1Q6MZM0 1159 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 TTI2Q6NXR4 508 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 PIP4P1Q86T03 277 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 CAMK1DQ8IU85 385 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 FRMD1Q8N878 549 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 C16orf52Q8NHV5 167 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 CEP76Q8TAP6 659 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 MPLKIPQ8TAP9 179 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 NSUN4Q96CB9 384 aaKnown RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 WDR77Q9BQA1 342 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 TRMOQ9BU70 441 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 KLHL31Q9H511 634 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 SYNCQ9H7C4 482 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 FBRSL1Q9HCM7 1045 aaKnown RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 NRIP3Q9NQ35 241 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 ASAH2Q9NR71 780 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 HAUS2Q9NVX0 235 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 PTGFRNQ9P2B2 879 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 C11orf21Q9P2W6 132 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 ZNF70Q9UC06 446 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-205ENST00000550592 NDRG3Q9UGV2 375 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 ADAM18Q9Y3Q7 739 aa5.1□□□□□ -1.59
LIMA1-205ENST00000550592 A2MP01023 1474 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 SETD5Q9C0A6 1442 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 DYTNA2CJ06 578 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 TYW5A2RUC4 315 aaKnown RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 HSPB2A8KAH6 182 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 EIF3CLB5ME19 914 aaKnown RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 AP3D1O14617 1153 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 BCAT2O15382 392 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 SEC14L5O43304 696 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 CLDN7O95471 211 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 CYP19A1P11511 503 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 RARGP13631 454 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 AVPR1AP37288 418 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 PIP4K2AP48426 406 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 CSTF3Q12996 717 aaKnown RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 OLIG2Q13516 323 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 RUNX2Q13950 521 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 LPIN1Q14693 890 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 SHBQ15464 509 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 HSPB2Q16082 182 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 ALG11Q2TAA5 492 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 C16orf54Q6UWD8 224 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 GSTA5Q7RTV2 222 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 LURAP1LQ8IV03 231 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 DENND6AQ8IWF6 608 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 ARHGAP12Q8IWW6 846 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 DNAJC10Q8IXB1 793 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 SRRM1Q8IYB3 904 aaKnown RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 TTC39CQ8N584 583 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 TEX45Q8NA69 505 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 GJC3Q8NFK1 279 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 SCFD2Q8WU76 684 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 GTF3C6Q969F1 213 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 NEUROD6Q96NK8 337 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 BBS4Q96RK4 519 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 NUF2Q9BZD4 464 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 CCDC68Q9H2F9 335 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 POLR1BQ9H9Y6 1135 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 ANKRD10Q9NXR5 420 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 TUBA8Q9NY65 449 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-205ENST00000550592 TBC1D29Q9UFV1 150 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 VPS28Q9UK41 221 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 BTBD3Q9Y2F9 522 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 FRMD4BQ9Y2L6 1034 aa5.09□□□□□ -1.59
LIMA1-205ENST00000550592 ZNF804BA4D1E1 1349 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 CHD4Q14839 1912 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 A0A0U1RQF3 1178 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 PTGES3LE9PB15 166 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 KLK8O60259 260 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 AGAP20933 346 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 DCTDP32321 178 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 HADHAP40939 763 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 RASSF2P50749 326 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 CLCN5P51795 746 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 FAM27E3Q08E93 113 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 GOLGA8DPQ0D2H9 430 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 NIPAL4Q0D2K0 466 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 GRIK3Q13003 919 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 CUL4AQ13619 759 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 FRG1Q14331 258 aaKnown RBP5.08□□□□□ -1.6
LIMA1-205ENST00000550592 FGFBP1Q14512 234 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 SRSF7Q16629 238 aaKnown RBP eCLIP5.08□□□□□ -1.6
LIMA1-205ENST00000550592 MTX3Q5HYI7 312 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 EPHA10Q5JZY3 1008 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 Q5PR19 223 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 ZNF626Q68DY1 528 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 SYCE2Q6PIF2 218 aa5.08□□□□□ -1.6
LIMA1-205ENST00000550592 TSSK4Q6SA08 328 aa5.08□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms