RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 LIMD1Q9UGP4 676 aa16.35■□□□□ 0.21
CUX1-213ENST00000549414 TLL1O43897 1013 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 CHRNGP07510 517 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 SELPP16109 830 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 ARL4DP49703 201 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 PURAQ00577 322 aaKnown RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 HIST2H2ACQ16777 129 aaPredicted RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 HIST2H2AA3Q6FI13 130 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 GRAMD4Q6IC98 578 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 AFTPHQ6ULP2 937 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 MARK2Q7KZI7 788 aaKnown RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 IFNL1Q8IU54 200 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 RTL3Q8N8U3 475 aaKnown RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 IGSF9Q9P2J2 1179 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 TIMM22Q9Y584 194 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 MYO18AQ92614 2054 aaKnown RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 GLI3P10071 1580 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 KIF1CO43896 1103 aaKnown RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 TTPAP49638 278 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 INSCQ1MX18 579 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 STK32CQ86UX6 486 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 ESAMQ96AP7 390 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 FAM126AQ9BYI3 521 aaPredicted RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 NMRK1Q9NWW6 199 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 USP54Q70EL1 1684 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 C16orf96A6NNT2 1141 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 AZIN1O14977 448 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 CDH2P19022 906 aaPredicted RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 GSSP48637 474 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 CCDC15Q0P6D6 951 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 CDC16Q13042 620 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 ACOX1Q15067 660 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 RALGPS1Q5JS13 557 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 LPCAT4Q643R3 524 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 DHDDSQ86SQ9 333 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 SSU72Q9NP77 194 aaKnown RBP16.34■□□□□ 0.21
CUX1-213ENST00000549414 NHSL1Q5SYE7 1610 aa16.34■□□□□ 0.21
CUX1-213ENST00000549414 IGKV6-21A0A0C4DH24 114 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 KANSL1LA0AUZ9 987 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 CA12O43570 354 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 EPB42P16452 691 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 TYMPP19971 482 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 GPR15P49685 360 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 SLC9A4Q6AI14 798 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 SLC25A51Q9H1U9 297 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 BLOC1S6Q9UL45 172 aa16.33■□□□□ 0.21
CUX1-213ENST00000549414 INHAP05111 366 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 ATP6V1E1P36543 226 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 SLC7A2P52569 658 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 DAB2P98082 770 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 TMEM40Q8WWA1 233 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 PSAT1Q9Y617 370 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 COL2A1P02458 1487 aaPredicted RBP16.33■□□□□ 0.2
CUX1-213ENST00000549414 TBC1D3BA6NDS4 549 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 ITM2AO43736 263 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 VAV1P15498 845 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 IVDP26440 423 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 NEK3P51956 506 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 RAP1GDS1P52306 607 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 ACLYP53396 1101 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 RPS24P62847 133 aaKnown RBP16.33■□□□□ 0.2
CUX1-213ENST00000549414 RALGDSQ12967 914 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 CPSF6Q16630 551 aaKnown RBP eCLIP16.33■□□□□ 0.2
CUX1-213ENST00000549414 IRGCQ6NXR0 463 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 RP9Q8TA86 221 aaKnown RBP16.33■□□□□ 0.2
CUX1-213ENST00000549414 GFM2Q969S9 779 aaKnown RBP16.33■□□□□ 0.2
CUX1-213ENST00000549414 MRPS23Q9Y3D9 190 aaKnown RBP16.33■□□□□ 0.2
CUX1-213ENST00000549414 AP4S1Q9Y587 144 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 MYO7AQ13402 2215 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 MYH7BA7E2Y1 1941 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP16.33■□□□□ 0.2
CUX1-213ENST00000549414 STBD1O95210 358 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 PGM3O95394 542 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 TGDSO95455 350 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 FAM58BPP0C7Q3 252 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 OR56A5P0C7T3 313 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 KCNE1P15382 129 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 SEMG2Q02383 582 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 MTA1Q13330 715 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 DOK6Q6PKX4 331 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 P3H2Q8IVL5 708 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 RDH11Q8TC12 318 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 MCOLN3Q8TDD5 553 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 PAAF1Q9BRP4 392 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 RMND5AQ9H871 391 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 DPP7Q9UHL4 492 aa16.33■□□□□ 0.2
CUX1-213ENST00000549414 IPO13O94829 963 aaKnown RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 NELFEP18615 380 aaKnown RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 GLUD2P49448 558 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 CAMK2GQ13555 558 aaPredicted RBP16.32■□□□□ 0.2
CUX1-213ENST00000549414 TIGD2Q4W5G0 525 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 NAT16Q8N8M0 369 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 HEXDCQ8WVB3 486 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 GDAP2Q9NXN4 497 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 RAI2Q9Y5P3 530 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 AK5Q9Y6K8 562 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 FAM72CH0Y354 149 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 SLC10A7Q0GE19 358 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 FAM72AQ5TYM5 149 aa16.32■□□□□ 0.2
CUX1-213ENST00000549414 FAM72DQ6L9T8 149 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms