RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 ZNF366Q8N895 744 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 GABPB2Q8TAK5 448 aaPredicted RBP16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 DTX3LQ8TDB6 740 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 SCG3Q8WXD2 468 aaKnown RBP16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 NSMCE3Q96MG7 304 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 NEUROG2Q9H2A3 272 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 PABPC3Q9H361 631 aaKnown RBP16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP16.09■□□□□ 0.176e-8■■■□□ 14.7
PRPF40A-212ENST00000545856 NFKBIL1Q9UBC1 381 aaPredicted RBP16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 SOX13Q9UN79 622 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 TCAF1Q9Y4C2 921 aa16.09■□□□□ 0.17
PRPF40A-212ENST00000545856 UQCRHLA0A096LP55 91 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 TTC24A2A3L6 582 aaPredicted RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 F5H423 210 aaPredicted RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 GOLGA8MH3BSY2 632 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 USP12O75317 370 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 GJB3O75712 270 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 USP1O94782 785 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 IGLV3-19P01714 112 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 POLBP06746 335 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 UQCRHP07919 91 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 PDHA1P08559 390 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 PAMP19021 973 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 SLC8A1P32418 973 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 HMGCLP35914 325 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 MAGEA4P43358 317 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 RPS14P62263 151 aaKnown RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 DHX9Q08211 1270 aaKnown RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 PDIA2Q13087 525 aaKnown RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 MSLNQ13421 630 aaPredicted RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 GALNT3Q14435 633 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 SPARCL1Q14515 664 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 BBS9Q3SYG4 887 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 NEK5Q6P3R8 708 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 FBXL19Q6PCT2 694 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 DPPA4Q7L190 304 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 PARS2Q7L3T8 475 aaKnown RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 TMC3Q7Z5M5 1100 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 TMEM135Q86UB9 458 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 TMPRSS6Q8IU80 811 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 MMAAQ8IVH4 418 aaKnown RBP16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 PYROXD1Q8WU10 500 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 STAMBPL1Q96FJ0 436 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 SIPA1Q96FS4 1042 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 FOXQ1Q9C009 403 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 EPC1Q9H2F5 836 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 NCKAP1Q9Y2A7 1128 aa16.08■□□□□ 0.16
PRPF40A-212ENST00000545856 MROH6A6NGR9 719 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 AREL1O15033 823 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 TSPAN6O43657 245 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 ABHD2P08910 425 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 ADRB3P13945 408 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 AOC1P19801 751 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 HOXA6P31267 233 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 VIPR1P32241 457 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 PHBP35232 272 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 MMP12P39900 470 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 HADHAP40939 763 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 GRIA1P42261 906 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 PSMD8P48556 350 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 CCR3P51677 355 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 SESN2P58004 480 aaPredicted RBP16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 ACVR1Q04771 509 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 SKIDA1Q1XH10 827 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 SPANXN3Q5MJ09 141 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 STEAP4Q687X5 459 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 PKN3Q6P5Z2 889 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 LMNTD2Q8IXW0 634 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 ZBED8Q8IZ13 594 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 STYXQ8WUJ0 223 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 FUT8Q9BYC5 575 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 TXLNGYQ9BZA5 131 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 MTG2Q9H4K7 406 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 SAYSD1Q9NPB0 183 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 SARDHQ9UL12 918 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 ZNF711Q9Y462 761 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 ZDBF2Q9HCK1 2354 aa16.07■□□□□ 0.16
PRPF40A-212ENST00000545856 CCDC163A0A0D9SF12 145 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 H7C0S8 307 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 ZNF217O75362 1048 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 MYBL2P10244 700 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 ACADMP11310 421 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 TIMP2P16035 220 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 H2AFXP16104 143 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 LPOP22079 712 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 MGAT1P26572 445 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 GKP32189 559 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 WASP42768 502 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 CHRNA4P43681 627 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 ARHGEF7Q14155 803 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 FNBP1LQ5T0N5 605 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 SYCP2LQ5T4T6 812 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 KIAA1211LQ6NV74 962 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 Q6ZS52 159 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 GLT6D1Q7Z4J2 308 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 BMP8AQ7Z5Y6 402 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 TTC7BQ86TV6 843 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 CCDC25Q86WR0 208 aa16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 CBARPQ8N350 705 aaPredicted RBP16.06■□□□□ 0.16
PRPF40A-212ENST00000545856 SLC25A41Q8N5S1 370 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms