RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 IL12RB2Q99665 862 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 C1QTNF7Q9BXJ2 289 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 GOLPH3Q9H4A6 298 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 NT5MQ9NPB1 228 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 SCUBE2Q9NQ36 999 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 DDX56Q9NY93 547 aaKnown RBP14.27□□□□□ -0.13
USP28-209ENST00000540925 FTSJ1Q9UET6 329 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 KLK13Q9UKR3 277 aa14.27□□□□□ -0.13
USP28-209ENST00000540925 APOBEC2Q9Y235 224 aaKnown RBP14.27□□□□□ -0.13
USP28-209ENST00000540925 PTPRBP23467 1997 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 BTNL10A8MVZ5 291 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 TRIM38O00635 465 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 SDC3O75056 442 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 KRT1P04264 644 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 CCNB1P14635 433 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 CES1P23141 567 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 IFI35P80217 286 aaPredicted RBP14.26□□□□□ -0.13
USP28-209ENST00000540925 ZNF211Q13398 564 aaPredicted RBP14.26□□□□□ -0.13
USP28-209ENST00000540925 PDE1CQ14123 709 aaPredicted RBP14.26□□□□□ -0.13
USP28-209ENST00000540925 SPA17Q15506 151 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 KATNAL2Q8IYT4 538 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 EID2Q8N6I1 236 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 OR4C6Q8NH72 309 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 TPCN2Q8NHX9 752 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 PIH1D2Q8WWB5 315 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 COQ10AQ96MF6 247 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 LGMNQ99538 433 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 SEMA3CQ99985 751 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 POLR1EQ9GZS1 481 aaKnown RBP14.26□□□□□ -0.13
USP28-209ENST00000540925 B4GALT6Q9UBX8 382 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 RALYQ9UKM9 306 aaKnown RBP14.26□□□□□ -0.13
USP28-209ENST00000540925 PHTF1Q9UMS5 762 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 MSRB2Q9Y3D2 182 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 PCDHGA1Q9Y5H4 931 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 ZFYVE26Q68DK2 2539 aa14.26□□□□□ -0.13
USP28-209ENST00000540925 ENC1O14682 589 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 PJA2O43164 708 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 SPOPO43791 374 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 RECQL5O94762 991 aaPredicted RBP14.25□□□□□ -0.13
USP28-209ENST00000540925 LDOC1O95751 146 aaPredicted RBP14.25□□□□□ -0.13
USP28-209ENST00000540925 CPP00450 1065 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 PRLP01236 227 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 HLA-DQB2P05538 268 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 MMP2P08253 660 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 PDHA1P08559 390 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 LHCGRP22888 699 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 MARCKSL1P49006 195 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 ACADVLP49748 655 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 PEX5P50542 639 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 HNRNPKP61978 463 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP28-209ENST00000540925 ADCY2Q08462 1091 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 NIPAL4Q0D2K0 466 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 ZBTB17Q13105 803 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 CNGA3Q16281 694 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 ZNF542PQ5EBM4 170 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 MACC1Q6ZN28 852 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 CCDC13Q8IYE1 715 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 CNTD1Q8N815 330 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 ZNF548Q8NEK5 533 aaPredicted RBP14.25□□□□□ -0.13
USP28-209ENST00000540925 RNF25Q96BH1 459 aaPredicted RBP14.25□□□□□ -0.13
USP28-209ENST00000540925 SCRN2Q96FV2 425 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 CNDP2Q96KP4 475 aaKnown RBP14.25□□□□□ -0.13
USP28-209ENST00000540925 TBATAQ96M53 351 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 LACRTQ9GZZ8 138 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 RBM22Q9NW64 420 aaKnown RBP eCLIP14.25□□□□□ -0.13
USP28-209ENST00000540925 DNAJC28Q9NX36 388 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 IMPACTQ9P2X3 320 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 RAI2Q9Y5P3 530 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 DUSP10Q9Y6W6 482 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 LRP4O75096 1905 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 PLXNB3Q9ULL4 1909 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 LAMA5O15230 3695 aa14.25□□□□□ -0.13
USP28-209ENST00000540925 LY6G6EA0A0G2JKS1 128 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 NPIPB15A6NHN6 443 aaPredicted RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 APOL1O14791 398 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 SCAMP1O15126 338 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 SIGLEC6O43699 453 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 HEXIM1O94992 359 aaKnown RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 CAPNS1P04632 268 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 ELFN1P0C7U0 828 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 ZFXP17010 805 aaPredicted RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 VIPR1P32241 457 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 TRIM23P36406 574 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 NOP2P46087 812 aaKnown RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 DSC2Q02487 901 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 DNAJC3Q13217 504 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 MTM1Q13496 603 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 INPP5AQ14642 412 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 PTPRRQ15256 657 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 SMAD1Q15797 465 aaKnown RBP14.24□□□□□ -0.13
USP28-209ENST00000540925 ZFYVE27Q5T4F4 411 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 NPNTQ6UXI9 565 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 SPOCD1Q6ZMY3 1216 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 TMPRSS7Q7RTY8 843 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 PELI3Q8N2H9 469 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 LRRC57Q8N9N7 239 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 FAM181AQ8N9Y4 354 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 PLA2G15Q8NCC3 412 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 KRT35Q92764 455 aa14.24□□□□□ -0.13
USP28-209ENST00000540925 TADA1Q96BN2 335 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms