RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PIAS1O75925 651 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 RFC2P35250 354 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 SPAM1P38567 509 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 NDST2P52849 883 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 TAF5Q15542 800 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 GPRIN3Q6ZVF9 776 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 TMPRSS6Q8IU80 811 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 CDYL2Q8N8U2 506 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ZFP28Q8NHY6 868 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 SNX15Q9NRS6 342 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 C15orf38-AP3S2A0A0A6YYH1 394 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 PRMT5O14744 637 aaPredicted RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 DDX3YO15523 660 aaKnown RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 ENO2P09104 434 aaPredicted RBP14.16□□□□□ -0.14
USP3-204ENST00000540797 COL6A1P12109 1028 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 SLC20A2Q08357 652 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 ARPINQ7Z6K5 226 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 CLYBLQ8N0X4 340 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 HERVK_113Q902F9 699 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 HEPHQ9BQS7 1158 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 CACNG4Q9UBN1 327 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 FBXW11Q9UKB1 542 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 COG5Q9UP83 839 aa14.16□□□□□ -0.14
USP3-204ENST00000540797 TCRBV9S1A1TA0A576 114 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 LRRC72A6NJI9 287 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 H0Y858 1186 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 CDKN2BP42772 138 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 CXCR3P49682 368 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 RAD23AP54725 363 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 PACS1Q6VY07 963 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 UBE2R2Q712K3 238 aaPredicted RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 RNF168Q8IYW5 571 aaPredicted RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 KLHL20Q9Y2M5 609 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 ARIH1Q9Y4X5 557 aaPredicted RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 YIPF1Q9Y548 306 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 BCLAF3A2AJT9 711 aaKnown RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 OR10H2O60403 315 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 DSG1Q02413 1049 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 AP2M1Q96CW1 435 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 PPP3R2Q96LZ3 170 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 GBA3Q9H227 469 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 XPR1Q9UBH6 696 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 INVSQ9Y283 1065 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 ATG13O75143 517 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 APOA1P02647 267 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 PCCBP05166 539 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 UBTFL6P0CB48 400 aaPredicted RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 TSPAN8P19075 237 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 TOMM20Q15388 145 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 AP1ARQ63HQ0 302 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 GPR156Q8NFN8 814 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 ACTRT2Q8TDY3 377 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 SH3RF2Q8TEC5 729 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 PROX1Q92786 737 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 WRAP53Q9BUR4 548 aaKnown RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 ARMCX1Q9P291 453 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 M0R3G1 203 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 MATN3O15232 486 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 TPSB2P20231 275 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 NOS3P29474 1203 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 AP1S1P61966 158 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 TPSAB1Q15661 275 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 AP5B1Q2VPB7 878 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 DNAJC1Q96KC8 554 aaKnown RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 ACAT2Q9BWD1 397 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 RHOBTB2Q9BYZ6 727 aa14.15□□□□□ -0.14
USP3-204ENST00000540797 R3HDM2Q9Y2K5 976 aaKnown RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 ZNF142P52746 1687 aaPredicted RBP14.15□□□□□ -0.14
USP3-204ENST00000540797 SLC28A1O00337 649 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 IDSP22304 550 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 SNAP47Q5SQN1 464 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 PIWIL4Q7Z3Z4 852 aaKnown RBP14.14□□□□□ -0.15
USP3-204ENST00000540797 SAPCD2Q86UD0 394 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 PIWIL2Q8TC59 973 aaKnown RBP14.14□□□□□ -0.15
USP3-204ENST00000540797 SLC25A51Q9H1U9 297 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 FAM83DQ9H4H8 585 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 NOD2Q9HC29 1040 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 KCNK4Q9NYG8 393 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 CNTN3Q9P232 1028 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 PCDHGC4Q9Y5F7 938 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 KCNH1O95259 989 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 PFKMP08237 780 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 FASP25445 335 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 UBE3AQ05086 875 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 SPIRE1Q08AE8 756 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 UBXN2BQ14CS0 331 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 FNBP1LQ5T0N5 605 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 ZBTB49Q6ZSB9 765 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 TMEM26Q6ZUK4 368 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 CYP4Z2PQ8N1L4 340 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 MCCC1Q96RQ3 725 aaPredicted RBP14.14□□□□□ -0.15
USP3-204ENST00000540797 TBCDQ9BTW9 1192 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 NOCTQ9UK39 431 aaKnown RBP14.14□□□□□ -0.15
USP3-204ENST00000540797 PCDHB1Q9Y5F3 818 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 ACTL7BQ9Y614 415 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 INSIG1O15503 277 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 CPSF6Q16630 551 aaKnown RBP eCLIP14.14□□□□□ -0.15
USP3-204ENST00000540797 KRT73Q86Y46 540 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 RDH11Q8TC12 318 aa14.14□□□□□ -0.15
USP3-204ENST00000540797 RPL10LQ96L21 214 aaKnown RBP14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms