RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 KCNJ8Q15842 424 aa8.79□□□□□ -1
YBX3-208ENST00000540447 CNTD1Q8N815 330 aa8.79□□□□□ -1
YBX3-208ENST00000540447 MKL1Q969V6 931 aa8.79□□□□□ -1
YBX3-208ENST00000540447 ZNF317Q96PQ6 595 aaPredicted RBP8.79□□□□□ -1
YBX3-208ENST00000540447 SLC38A2Q96QD8 506 aa8.79□□□□□ -1
YBX3-208ENST00000540447 SLC30A2Q9BRI3 323 aa8.79□□□□□ -1
YBX3-208ENST00000540447 RSPH9Q9H1X1 276 aaPredicted RBP8.79□□□□□ -1
YBX3-208ENST00000540447 DHX33Q9H6R0 707 aaKnown RBP8.79□□□□□ -1
YBX3-208ENST00000540447 TMEM98Q9Y2Y6 226 aa8.79□□□□□ -1
YBX3-208ENST00000540447 A0A087X1B8 175 aa8.79□□□□□ -1
YBX3-208ENST00000540447 IRGMA1A4Y4 181 aa8.79□□□□□ -1
YBX3-208ENST00000540447 GLRA2P23416 452 aa8.79□□□□□ -1
YBX3-208ENST00000540447 EVI2BP34910 448 aa8.79□□□□□ -1
YBX3-208ENST00000540447 DSTNP60981 165 aa8.79□□□□□ -1
YBX3-208ENST00000540447 RPS8P62241 208 aaKnown RBP8.79□□□□□ -1
YBX3-208ENST00000540447 FSTL1Q12841 308 aa8.79□□□□□ -1
YBX3-208ENST00000540447 SLC47A2Q86VL8 602 aa8.79□□□□□ -1
YBX3-208ENST00000540447 CEP76Q8TAP6 659 aa8.79□□□□□ -1
YBX3-208ENST00000540447 FAM136AQ96C01 138 aa8.79□□□□□ -1
YBX3-208ENST00000540447 PABPC5Q96DU9 382 aaKnown RBP8.79□□□□□ -1
YBX3-208ENST00000540447 UNC93B1Q9H1C4 597 aa8.79□□□□□ -1
YBX3-208ENST00000540447 POLR3FQ9H1D9 316 aaPredicted RBP8.79□□□□□ -1
YBX3-208ENST00000540447 COMMD3Q9UBI1 195 aa8.79□□□□□ -1
YBX3-208ENST00000540447 PCDHGB3Q9Y5G1 929 aa8.79□□□□□ -1
YBX3-208ENST00000540447 LTFP02788 710 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PROS1P07225 676 aa8.78□□□□□ -1
YBX3-208ENST00000540447 SLC6A4P31645 630 aa8.78□□□□□ -1
YBX3-208ENST00000540447 DLG2Q15700 870 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CYP2A13Q16696 494 aa8.78□□□□□ -1
YBX3-208ENST00000540447 TIGD6Q17RP2 521 aa8.78□□□□□ -1
YBX3-208ENST00000540447 GPRC6AQ5T6X5 926 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CCBE1Q6UXH8 406 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 ZNF574Q6ZN55 896 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 SSX9Q7RTT3 188 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CATSPER4Q7RTX7 472 aa8.78□□□□□ -1
YBX3-208ENST00000540447 METTL4Q8N3J2 472 aa8.78□□□□□ -1
YBX3-208ENST00000540447 HDDC3Q8N4P3 179 aa8.78□□□□□ -1
YBX3-208ENST00000540447 ZSCAN1Q8NBB4 408 aa8.78□□□□□ -1
YBX3-208ENST00000540447 MED15Q96RN5 788 aa8.78□□□□□ -1
YBX3-208ENST00000540447 SPATA9Q9BWV2 254 aa8.78□□□□□ -1
YBX3-208ENST00000540447 ADGRE2Q9UHX3 823 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PRR12Q9ULL5 1215 aa8.78□□□□□ -1
YBX3-208ENST00000540447 MED14O60244 1454 aa8.78□□□□□ -1
YBX3-208ENST00000540447 GNG14A0A1W2PPG7 69 aa8.78□□□□□ -1
YBX3-208ENST00000540447 TRAFD1O14545 582 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 BANF1O75531 89 aa8.78□□□□□ -1
YBX3-208ENST00000540447 ITGA2P17301 1181 aa8.78□□□□□ -1
YBX3-208ENST00000540447 GPC1P35052 558 aa8.78□□□□□ -1
YBX3-208ENST00000540447 TOB1P50616 345 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 HIST2H2ACQ16777 129 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 ZNF772Q68DY9 489 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 HIST2H2AA3Q6FI13 130 aa8.78□□□□□ -1
YBX3-208ENST00000540447 SMIM5Q71RC9 77 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CCDC71Q8IV32 467 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 GPR65Q8IYL9 337 aa8.78□□□□□ -1
YBX3-208ENST00000540447 INO80EQ8NBZ0 244 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 CABLES1Q8TDN4 633 aa8.78□□□□□ -1
YBX3-208ENST00000540447 MRPL4Q9BYD3 311 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 PLEKHA6Q9Y2H5 1048 aa8.78□□□□□ -1
YBX3-208ENST00000540447 OAS3Q9Y6K5 1087 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 FRMPD4Q14CM0 1322 aa8.78□□□□□ -1
YBX3-208ENST00000540447 DHX15O43143 795 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 NPM3O75607 178 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 IL2RBP14784 551 aa8.78□□□□□ -1
YBX3-208ENST00000540447 LHCGRP22888 699 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PPP2R1BP30154 601 aa8.78□□□□□ -1
YBX3-208ENST00000540447 ANTXR2P58335 489 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PRKCEQ02156 737 aa8.78□□□□□ -1
YBX3-208ENST00000540447 RGS1Q08116 209 aa8.78□□□□□ -1
YBX3-208ENST00000540447 NFE2Q16621 373 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 GLYATQ6IB77 296 aa8.78□□□□□ -1
YBX3-208ENST00000540447 ZCCHC12Q6PEW1 402 aa8.78□□□□□ -1
YBX3-208ENST00000540447 WDR49Q8IV35 697 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PACRGLQ8N7B6 248 aa8.78□□□□□ -1
YBX3-208ENST00000540447 METTL6Q8TCB7 284 aa8.78□□□□□ -1
YBX3-208ENST00000540447 DNAJA4Q8WW22 397 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 PIGKQ92643 395 aa8.78□□□□□ -1
YBX3-208ENST00000540447 TNIP3Q96KP6 325 aa8.78□□□□□ -1
YBX3-208ENST00000540447 LENG8Q96PV6 779 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 APBA2Q99767 749 aa8.78□□□□□ -1
YBX3-208ENST00000540447 DPAGT1Q9H3H5 408 aa8.78□□□□□ -1
YBX3-208ENST00000540447 WDR55Q9H6Y2 383 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 SLAIN2Q9P270 581 aa8.78□□□□□ -1
YBX3-208ENST00000540447 MGAT4AQ9UM21 535 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PLLPQ9Y342 182 aa8.78□□□□□ -1
YBX3-208ENST00000540447 FOXO6A8MYZ6 492 aa8.78□□□□□ -1
YBX3-208ENST00000540447 NCAM1P13591 858 aa8.78□□□□□ -1
YBX3-208ENST00000540447 FNTBP49356 437 aa8.78□□□□□ -1
YBX3-208ENST00000540447 FXR2P51116 673 aaKnown RBP eCLIP8.78□□□□□ -1
YBX3-208ENST00000540447 SPIBQ01892 262 aa8.78□□□□□ -1
YBX3-208ENST00000540447 LIPMQ5VYY2 423 aa8.78□□□□□ -1
YBX3-208ENST00000540447 RNF219Q5W0B1 726 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 IPCEF1Q8WWN9 437 aaPredicted RBP8.78□□□□□ -1
YBX3-208ENST00000540447 LGALS13Q9UHV8 139 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CNOT6Q9ULM6 557 aaKnown RBP8.78□□□□□ -1
YBX3-208ENST00000540447 USP18Q9UMW8 372 aa8.78□□□□□ -1
YBX3-208ENST00000540447 PIAS1O75925 651 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CDKN2CP42773 168 aa8.78□□□□□ -1
YBX3-208ENST00000540447 ACOT2P49753 483 aa8.78□□□□□ -1
YBX3-208ENST00000540447 CAPZA1P52907 286 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms