RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ESCO2Q56NI9 601 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 FAM69AQ5T7M9 428 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 CPLX2Q6PUV4 134 aaKnown RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 C17orf99Q6UX52 265 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 ATF7IPQ6VMQ6 1270 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 DSTYKQ6XUX3 929 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 KRBA2Q6ZNG9 492 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 C4orf50Q6ZRC1 276 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 CCDC129Q6ZRS4 1044 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 BBS12Q6ZW61 710 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 MOB3CQ70IA8 216 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 CPLX4Q7Z7G2 160 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 GPAT4Q86UL3 456 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 ZC3HC1Q86WB0 502 aaKnown RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 TMTC1Q8IUR5 882 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 CPOQ8IVL8 374 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 KIAA2013Q8IYS2 634 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 DSELQ8IZU8 1212 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 RBMXL3Q8N7X1 1067 aaKnown RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 PCYOX1LQ8NBM8 494 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 LSM14AQ8ND56 463 aaKnown RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 LILRB1Q8NHL6 650 aaPredicted RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 SECTM1Q8WVN6 248 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 ST8SIA4Q92187 359 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 SKA1Q96BD8 255 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 FBXL8Q96CD0 374 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 SAAL1Q96ER3 474 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 BICD1Q96G01 975 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 HES6Q96HZ4 224 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 APOPT1Q96IL0 206 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 ZNF570Q96NI8 536 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 BBS4Q96RK4 519 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 BEX4Q9NWD9 120 aaPredicted RBP2.86□□□□□ -1.95
CD44-238ENST00000534296 KIAA1456Q9P272 454 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 HSF4Q9ULV5 492 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 VDAC3Q9Y277 283 aa2.86□□□□□ -1.95
CD44-238ENST00000534296 DDX52Q9Y2R4 599 aaKnown RBP eCLIP2.86□□□□□ -1.95
CD44-238ENST00000534296 TEX13CA0A0J9YWL9 993 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 A0A1B0GUV1 79 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 MAGEA13PA6NCF6 341 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 GAGE10A6NGK3 116 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 HSPB2A8KAH6 182 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 TEX22C9J3V5 150 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 KLRF2D3W0D1 207 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 LINC01565O15544 149 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 ZNF432O94892 652 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 CAMTA2O94983 1202 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 ZNF12P17014 697 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 IL15P40933 162 aaPredicted RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 CASP2P42575 452 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 GABRB2P47870 512 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 PDLIM4P50479 330 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 CLNS1AP54105 237 aaKnown RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 RAD23BP54727 409 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 EFNB1P98172 346 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 EEF1A2Q05639 463 aaKnown RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 DDR1Q08345 913 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 HYAL1Q12794 435 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 DHX34Q14147 1143 aaKnown RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 HSPB2Q16082 182 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 TCTN1Q2MV58 587 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 ZNF672Q499Z4 452 aaPredicted RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 TMEM81Q6P7N7 255 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 RHBDF2Q6PJF5 856 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 UNQ6126/PRO20091Q6UXV3 157 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 CCNI2Q6ZMN8 369 aaPredicted RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 Q6ZTC4 211 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 ARMC9Q7Z3E5 817 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 SFR1Q86XK3 245 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 ARRDC2Q8TBH0 407 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 MAGEC3Q8TD91 643 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 RUFY2Q8WXA3 655 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 ZUFSPQ96AP4 578 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 FEM1CQ96JP0 617 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 IL17FQ96PD4 163 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 KXD1Q9BQD3 176 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 MXRA8Q9BRK3 442 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 NUF2Q9BZD4 464 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 PAIP1Q9H074 479 aaKnown RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 DDX31Q9H8H2 851 aaKnown RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 ZNF556Q9HAH1 456 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 BPIFA1Q9NP55 256 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 KRT84Q9NSB2 600 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 SNTG1Q9NSN8 517 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 OLA1Q9NTK5 396 aaKnown RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 CISD1Q9NZ45 108 aaKnown RBP2.85□□□□□ -1.95
CD44-238ENST00000534296 SMARCAL1Q9NZC9 954 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 SLCO3A1Q9UIG8 710 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 CDC14AQ9UNH5 594 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 CAMK2AQ9UQM7 478 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 FAM96BQ9Y3D0 163 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 PCDHAC2Q9Y5I4 1007 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 SNX9Q9Y5X1 595 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 A3GALT2U3KPV4 340 aa2.85□□□□□ -1.95
CD44-238ENST00000534296 A0A0U1RQF3 1178 aa2.84□□□□□ -1.95
CD44-238ENST00000534296 A0A1W2PPH5 198 aa2.84□□□□□ -1.95
CD44-238ENST00000534296 CBY3A6NI87 242 aa2.84□□□□□ -1.95
CD44-238ENST00000534296 IFITM10A6NMD0 228 aa2.84□□□□□ -1.95
CD44-238ENST00000534296 EIF3CLB5ME19 914 aaKnown RBP2.84□□□□□ -1.95
CD44-238ENST00000534296 AKR1B15C9JRZ8 316 aaPredicted RBP2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms