RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 TMCO1Q9UM00 188 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 TRAF6Q9Y4K3 522 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 AK5Q9Y6K8 562 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 MPSTP25325 297 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 MSX2P35548 267 aaPredicted RBP13.88□□□□□ -0.19
SYNPO-205ENST00000522122 ATP6V0D1P61421 351 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 OGDHQ02218 1023 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 DPYSQ14117 519 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 AFTPHQ6ULP2 937 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 CXCL17Q6UXB2 119 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 LUZP2Q86TE4 346 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 KLRG1Q96E93 195 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 PPP3R2Q96LZ3 170 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 ASB8Q9H765 288 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 STMN3Q9NZ72 180 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 STK39Q9UEW8 545 aa13.88□□□□□ -0.19
SYNPO-205ENST00000522122 PNMA8CA0A1B0GUJ8 204 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 C2CD4BA6NLJ0 364 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 NRP2O60462 931 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 ULK1O75385 1050 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 LINGO3P0C6S8 592 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 PIRTP0C851 137 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 COL6A2P12110 1019 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 VCLP18206 1134 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 PSEN1P49768 467 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 IRF8Q02556 426 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 CNPY1Q3B7I2 92 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 BRMS1LQ5PSV4 323 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 PPP1R15BQ5SWA1 713 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 TYW3Q6IPR3 259 aaKnown RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 SCIMPQ6UWF3 145 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 AMIGO3Q86WK7 504 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 ZNF483Q8TF39 744 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 YIPF2Q9BWQ6 316 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 CACNA2D2Q9NY47 1150 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 KLHL20Q9Y2M5 609 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 BHMG1C9JSJ3 638 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 PLIN3O60664 434 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 CSH1P0DML2 217 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 CSH2P0DML3 217 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 RPS7P62081 194 aaKnown RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 DGCR6Q14129 220 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 MCRS1Q96EZ8 462 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 KCTD15Q96SI1 283 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 TSPAN18Q96SJ8 248 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 C2orf49Q9BVC5 232 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 KRCC1Q9NPI7 259 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 TMEM216Q9P0N5 145 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 SPACA6W5XKT8 324 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 CRYBB1P53674 252 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 TOP3AQ13472 1001 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 BROXQ5VW32 411 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 PMF1Q6P1K2 205 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 SPESP1Q6UW49 350 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 CASP12Q6UXS9 341 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 GPRIN3Q6ZVF9 776 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 OOSP2Q86WS3 158 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 WDR60Q8WVS4 1066 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 TEKT5Q96M29 485 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 MRPL9Q9BYD2 267 aaKnown RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 KLHL28Q9NXS3 571 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 UXTQ9UBK9 157 aaPredicted RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 MFSD11O43934 449 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 PAX3P23760 479 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 SERPINA4P29622 427 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 MRPS6P82932 125 aaKnown RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 TNFAIP8L3Q5GJ75 292 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 DPY19L2P1Q6NXN4 242 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 KRT78Q8N1N4 520 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 NPAS2Q99743 824 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 ZCCHC2Q9C0B9 1178 aaKnown RBP13.87□□□□□ -0.19
SYNPO-205ENST00000522122 SLC7A8Q9UHI5 535 aa13.87□□□□□ -0.19
SYNPO-205ENST00000522122 MANSC4A6NHS7 340 aaPredicted RBP13.86□□□□□ -0.19
SYNPO-205ENST00000522122 A8MX80 341 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 RFX3P48380 749 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 SPANXN2Q5MJ10 180 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 PRAMEF19Q5SWL8 479 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 CGB2Q6NT52 195 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 ARMC6Q6NXE6 501 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 CUZD1Q86UP6 607 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 UROC1Q96N76 676 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 CAPN10Q9HC96 672 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 ZMYND8Q9ULU4 1186 aaPredicted RBP13.86□□□□□ -0.19
SYNPO-205ENST00000522122 DOLKQ9UPQ8 538 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 ZNF541Q9H0D2 1346 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 DYTNA2CJ06 578 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 IFRD1O00458 451 aaPredicted RBP13.86□□□□□ -0.19
SYNPO-205ENST00000522122 COX7A2P14406 83 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 IDO1P14902 403 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 PEX2P28328 305 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 POLR2LP62875 67 aaKnown RBP13.86□□□□□ -0.19
SYNPO-205ENST00000522122 HSPA14Q0VDF9 509 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 TRAF3Q13114 568 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 INAQ16352 499 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 PPM1JQ5JR12 505 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 CEP78Q5JTW2 689 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 ZNF605Q86T29 641 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 EIF2B3Q9NR50 452 aaKnown RBP13.86□□□□□ -0.19
SYNPO-205ENST00000522122 TEX264Q9Y6I9 313 aa13.86□□□□□ -0.19
SYNPO-205ENST00000522122 STYXL1Q9Y6J8 313 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms