RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FEM1AQ9BSK4 669 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 ZYG11BQ9C0D3 744 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 LHX5Q9H2C1 402 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 SARDHQ9UL12 918 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 MMP17Q9ULZ9 603 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 PCDHGC4Q9Y5F7 938 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 MYO18BQ8IUG5 2567 aa7.97□□□□□ -1.13
LIMCH1-219ENST00000514096 C2CD4BA6NLJ0 364 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 CACNG3O60359 315 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 OLFM2O95897 454 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 RARAP10276 462 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 UNGP13051 313 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 EPHB1P54762 984 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 MLLT6P55198 1093 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 BLMHQ13867 455 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 ZNF268Q14587 947 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 GAB4Q2WGN9 574 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 ZNF569Q5MCW4 686 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 ZNF449Q6P9G9 518 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 RTL10Q7L3V2 364 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 BPHLQ86WA6 291 aaPredicted RBP7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 CAMK1DQ8IU85 385 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 CACNA2D3Q8IZS8 1091 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 AGAP11Q8TF27 550 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 TBATAQ96M53 351 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 PEBP4Q96S96 227 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 NPY6RQ99463 290 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 TTC1Q99614 292 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 DDX23Q9BUQ8 820 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 NEUROG2Q9H2A3 272 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 L2HGDHQ9H9P8 463 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 TRPV4Q9HBA0 871 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 NT5MQ9NPB1 228 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 DDX18Q9NVP1 670 aaKnown RBP7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 EBF1Q9UH73 591 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 CAPN11Q9UMQ6 739 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 MYO16Q9Y6X6 1858 aa7.96□□□□□ -1.13
LIMCH1-219ENST00000514096 RNF103O00237 685 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 IFNB1P01574 187 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 MPLP40238 635 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 MARCKSL1P49006 195 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 FNTAP49354 379 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 TPMTP51580 245 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 TAS2R40P59535 323 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 C1orf61Q13536 156 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 BEND6Q5SZJ8 279 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 DPY19L2P1Q6NXN4 242 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 DOK6Q6PKX4 331 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 MON1BQ7L1V2 547 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ZFPM2Q8WW38 1151 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 OVCA2Q8WZ82 227 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 DNAJC1Q96KC8 554 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF570Q96NI8 536 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 CAMK1GQ96NX5 476 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 CNPY3Q9BT09 278 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 BTBD1Q9H0C5 482 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ACTR5Q9H9F9 607 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ZSCAN32Q9NX65 697 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 CD84Q9UIB8 345 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 HCN2Q9UL51 889 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ERVW-1Q9UQF0 538 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ZW10O43264 779 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 GREM1O60565 184 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 OXSR1O95747 527 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 UBTFL6P0CB48 400 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 KIR2DL1P43626 348 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 GNA12Q03113 381 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ZNF235Q14590 738 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 FBXO43Q4G163 708 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 RNF43Q68DV7 783 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 LRRC8BQ6P9F7 803 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 LPCAT2Q7L5N7 544 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 ADIPOR2Q86V24 386 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 SPATA24Q86W54 205 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 CNGA4Q8IV77 575 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 CYP4X1Q8N118 509 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 PIP4K2CQ8TBX8 421 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 SLC35B4Q969S0 331 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 OMA1Q96E52 524 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 KLHL32Q96NJ5 620 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 MRPL47Q9HD33 250 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 AVENQ9NQS1 362 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 SEMA4GQ9NTN9 838 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 IPO11Q9UI26 975 aaKnown RBP7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 TEKT2Q9UIF3 430 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 DMXL2Q8TDJ6 3036 aa7.96□□□□□ -1.14
LIMCH1-219ENST00000514096 A0A1B0GVT2 93 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 FAM92AA1XBS5 289 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 GIPC1O14908 333 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SNX2O60749 519 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 LRCH4O75427 683 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 LEFTY1O75610 366 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 F9P00740 461 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 CYP1A1P04798 512 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 KRT20P35900 424 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 SLCO1A2P46721 670 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 FAM20CQ8IXL6 584 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 PARVBQ9HBI1 364 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 PRSS16Q9NQE7 514 aa7.95□□□□□ -1.14
LIMCH1-219ENST00000514096 DDX56Q9NY93 547 aaKnown RBP7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms