RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 GLT1D1Q96MS3 346 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 PGLYRP2Q96PD5 576 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 MTG1Q9BT17 334 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 DPP3Q9NY33 737 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 SFMBT1Q9UHJ3 866 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 DAPK2Q9UIK4 370 aa9.73□□□□□ -0.85
SYNE1-230ENST00000495090 MAGED2Q9UNF1 606 aaPredicted RBP9.73□□□□□ -0.85
SYNE1-230ENST00000495090 C1orf232A0A0U1RR37 186 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 KCNK1O00180 336 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 DAB1O75553 588 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 MATN4O95460 622 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 MMP10P09238 476 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PTPN2P17706 415 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 CD68P34810 354 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 HCAR3P49019 387 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 BACE1P56817 501 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 GJA9P57773 515 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 POU4F1Q01851 419 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 GNA12Q03113 381 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 NDUFA5Q16718 116 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PPP1R3AQ16821 1122 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TECRLQ5HYJ1 363 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 ZNF362Q5T0B9 420 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 XAF1Q6GPH4 301 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PLPPR4Q7Z2D5 763 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 CYP2U1Q7Z449 544 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 ACOT1Q86TX2 421 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 RETREG3Q86VR2 466 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 FAM131BQ86XD5 332 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 IFNLR1Q8IU57 520 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 SPPL2CQ8IUH8 684 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PARP8Q8N3A8 854 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 ABHD11Q8NFV4 315 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 FAM110BQ8TC76 370 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 USP33Q8TEY7 942 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 CLEC4CQ8WTT0 213 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TSPEARQ8WU66 669 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 OSCP1Q8WVF1 389 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 SNX19Q92543 992 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 VMP1Q96GC9 406 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 SH3YL1Q96HL8 342 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 CPB2Q96IY4 423 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 BTN2A3PQ96KV6 586 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 SLC9A7Q96T83 725 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 HGH1Q9BTY7 390 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 BEGAINQ9BUH8 593 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TRIM54Q9BYV2 358 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 MAP10Q9P2G4 905 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TMEM98Q9Y2Y6 226 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TSC22D4Q9Y3Q8 395 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TCRBV5S2A0A599 114 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 FXYD1O00168 92 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 EEF2KO00418 725 aaKnown RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 ARPC2O15144 300 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PFDN6O15212 129 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 ZBTB24O43167 697 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 CACNG3O60359 315 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 F7P08709 466 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 RBP1P09455 135 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 HNRNPLP14866 589 aaKnown RBP eCLIP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 EDNRBP24530 442 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 IDUAP35475 653 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 AVPR1AP37288 418 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 GRM5P41594 1212 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 LEPRP48357 1165 aaKnown RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 SULT1E1P49888 294 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 HNRNPFP52597 415 aaKnown RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 GABARAPL2P60520 117 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 OCA2Q04671 838 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PRPSAP1Q14558 356 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 SKIV2LQ15477 1246 aaKnown RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 FAM83EQ2M2I3 478 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 AASDHQ4L235 1098 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PCID2Q5JVF3 399 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 NEPROQ6NW34 567 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 PKN3Q6P5Z2 889 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 LAYNQ6UX15 382 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 CDR2LQ86X02 465 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 CEP97Q8IW35 865 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 OFCC1Q8IZS5 231 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TMEM130Q8N3G9 435 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TMCO5AQ8N6Q1 288 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 AGBL3Q8NEM8 1001 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 SP7Q8TDD2 431 aaPredicted RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 HEXDCQ8WVB3 486 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 RDH12Q96NR8 316 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 MRPL45Q9BRJ2 306 aaKnown RBP9.72□□□□□ -0.85
SYNE1-230ENST00000495090 FANCEQ9HB96 536 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 AKIP1Q9NQ31 210 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TRPV5Q9NQA5 729 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 IGSF5Q9NSI5 407 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 TRAF6Q9Y4K3 522 aa9.72□□□□□ -0.85
SYNE1-230ENST00000495090 ZSWIM8A7E2V4 1837 aa9.71□□□□□ -0.85
SYNE1-230ENST00000495090 TRIP11Q15643 1979 aa9.71□□□□□ -0.85
SYNE1-230ENST00000495090 A0A0J9YYE9 177 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 FAM149AA5PLN7 773 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 C16orf96A6NNT2 1141 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 A8MT66 165 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 KDM1AO60341 852 aa9.71□□□□□ -0.86
SYNE1-230ENST00000495090 OXSR1O95747 527 aaPredicted RBP9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms