RNA–Protein interactions for RNA: ENST00000494090.6

COL27A1-207, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL27A1, Length 5,329 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-207ENST00000494090 PCDHGA4Q9Y5G9 962 aa19.23■□□□□ 0.67
COL27A1-207ENST00000494090 FARP2O94887 1054 aaPredicted RBP19.22■□□□□ 0.67
COL27A1-207ENST00000494090 TAF13Q15543 124 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 DEFB115Q30KQ5 88 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 KIAA1324Q6UXG2 1013 aaKnown RBP19.22■□□□□ 0.67
COL27A1-207ENST00000494090 HEATR4Q86WZ0 1026 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 PACSIN3Q9UKS6 424 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 COMMD3-BMI1R4GMX3 469 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 PAPSS1O43252 624 aaPredicted RBP19.22■□□□□ 0.67
COL27A1-207ENST00000494090 RIPK1Q13546 671 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 SWT1Q5T5J6 900 aaKnown RBP19.22■□□□□ 0.67
COL27A1-207ENST00000494090 FAM180AQ6UWF9 173 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 KLHL1Q9NR64 748 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 SLC27A6Q9Y2P4 619 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 AZIN1O14977 448 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 IGFBP4P22692 258 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 KELP23276 732 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 ADSSP30520 456 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 CRATP43155 626 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 PTPRNQ16849 979 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 RACGAP1Q9H0H5 632 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 RHOJQ9H4E5 214 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 DHX33Q9H6R0 707 aaKnown RBP19.22■□□□□ 0.67
COL27A1-207ENST00000494090 CORO1CQ9ULV4 474 aaPredicted RBP19.22■□□□□ 0.67
COL27A1-207ENST00000494090 SMIM35A0A1B0GVV1 85 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 A8MX80 341 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 PGK1P00558 417 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 ARHGEF3Q9NR81 526 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 C3orf18Q9UK00 162 aa19.22■□□□□ 0.67
COL27A1-207ENST00000494090 PRR5-ARHGAP8B1AHC4 643 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 SMAD3P84022 425 aaKnown RBP19.21■□□□□ 0.67
COL27A1-207ENST00000494090 ARHGAP8P85298 464 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CACUL1Q86Y37 369 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CACTIN-AS1Q8N1I8 211 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 PHC3Q8NDX5 983 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 RERGQ96A58 199 aaPredicted RBP19.21■□□□□ 0.67
COL27A1-207ENST00000494090 Q96MT0 163 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 TCF12Q99081 682 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 PNPLA3Q9NST1 481 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 AGO1Q9UL18 857 aaKnown RBP19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CCNE2O96020 404 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 ADH1CP00326 375 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 ABL2P42684 1182 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 POLD2P49005 469 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 MAPK10P53779 464 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 PRKG2Q13237 762 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CRY2Q49AN0 593 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 ISLR2Q6UXK2 745 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 FAM35AQ86V20 835 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 TRMOQ9BU70 441 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CLEC4MQ9H2X3 399 aaPredicted RBP19.21■□□□□ 0.67
COL27A1-207ENST00000494090 SALL4Q9UJQ4 1053 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 IFNA16P05015 189 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 IDO1P14902 403 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 ALOX12P18054 663 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 FOLH1Q04609 750 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CDK18Q07002 472 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 MAPK11Q15759 364 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CHADLQ6NUI6 762 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 EIF3MQ7L2H7 374 aaKnown RBP19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CLNKQ7Z7G1 428 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 SCAIQ8N9R8 606 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 PPTC7Q8NI37 304 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 OR8D1Q8WZ84 308 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 NELL1Q92832 810 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 POLE3Q9NRF9 147 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 SLC12A4Q9UP95 1085 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 MRC1P22897 1456 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 DISP2A7MBM2 1401 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 ARF4P18085 180 aaPredicted RBP19.21■□□□□ 0.67
COL27A1-207ENST00000494090 PPIBP23284 216 aaKnown RBP19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CSNK2BP67870 215 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 C9orf57Q5W0N0 161 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 LLGL2Q6P1M3 1020 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 RBFAQ8N0V3 343 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 CPXM1Q96SM3 734 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 VWA7Q9Y334 891 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 KCNE2Q9Y6J6 123 aa19.21■□□□□ 0.67
COL27A1-207ENST00000494090 EFCAB10A6NFE3 127 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 GSC2O15499 205 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 AHCYL1O43865 530 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 GJB1P08034 283 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 CCNA2P20248 432 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 TAB1Q15750 504 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 REM2Q8IYK8 340 aaPredicted RBP19.21■□□□□ 0.66
COL27A1-207ENST00000494090 SFRP1Q8N474 314 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 BTRCQ9Y297 605 aa19.21■□□□□ 0.66
COL27A1-207ENST00000494090 PDE9AO76083 593 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 HNRNPLP14866 589 aaKnown RBP eCLIP19.2■□□□□ 0.663e-23■■■□□ 16.7
COL27A1-207ENST00000494090 CDKN2BP42772 138 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 TUSC3Q13454 348 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 EFCAB3Q8N7B9 438 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 VPS45Q9NRW7 570 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 KIAA1522Q9P206 1035 aaPredicted RBP19.2■□□□□ 0.66
COL27A1-207ENST00000494090 PCDHGC3Q9UN70 934 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 HBS1LQ9Y450 684 aaKnown RBP19.2■□□□□ 0.66
COL27A1-207ENST00000494090 TCRBV7S2A1N4TA0A589 114 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 CLDN5O00501 218 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 CILPO75339 1184 aa19.2■□□□□ 0.66
COL27A1-207ENST00000494090 SLC35G4P0C7Q5 338 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms