RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 FBXO39Q8N4B4 442 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 OR56A4Q8NGH8 313 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 ATL2Q8NHH9 583 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 OR1E3Q8WZA6 343 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 ECHDC3Q96DC8 303 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 ERGIC2Q96RQ1 377 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 LRRN3Q9H3W5 708 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 ATP13A3Q9H7F0 1226 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 LMBRD1Q9NUN5 540 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 TAS2R14Q9NYV8 317 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.47□□□□□ -0.41
CPSF3-204ENST00000489403 PCDHGA7Q9Y5G6 932 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 DGKBQ9Y6T7 804 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 BSNQ9UPA5 3926 aa12.47□□□□□ -0.41
CPSF3-204ENST00000489403 HELZ2Q9BYK8 2649 aaKnown RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 CFAP69A5D8W1 941 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 ARHGAP42A6NI28 874 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 J3QKU1 62 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 EEF2KO00418 725 aaKnown RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 EFSO43281 561 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 PALMO75781 387 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 RECQL5O94762 991 aaPredicted RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 ELFN1P0C7U0 828 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 DESP17661 470 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 GM2AP17900 193 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 SERPINA4P29622 427 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 SLC5A2P31639 672 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 CCKBRP32239 447 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 CSNK1DP48730 415 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 UBXN1Q04323 297 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 AFMIDQ63HM1 303 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 LIPIQ6XZB0 460 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 SRLQ86TD4 932 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 CCNJLQ8IV13 435 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 SFTPA2Q8IWL1 248 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 ARHGAP12Q8IWW6 846 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 ARFGAP1Q8N6T3 406 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 OR6C4Q8NGE1 309 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 FUBP1Q96AE4 644 aaKnown RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 TMEM74Q96NL1 305 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 CCNL2Q96S94 520 aaPredicted RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 PEBP4Q96S96 227 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 SNRNP25Q9BV90 132 aaKnown RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 CINPQ9BW66 212 aaPredicted RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 DHX35Q9H5Z1 703 aaKnown RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 FGF22Q9HCT0 170 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 MRPL40Q9NQ50 206 aaKnown RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 DONSONQ9NYP3 566 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 APPL1Q9UKG1 709 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 ACSL6Q9UKU0 697 aa12.46□□□□□ -0.41
CPSF3-204ENST00000489403 ATXN7L1Q9ULK2 861 aaPredicted RBP12.46□□□□□ -0.41
CPSF3-204ENST00000489403 B8ZZF3 427 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 TMX2-CTNND1H3BSU7 103 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 CACNB4O00305 520 aaPredicted RBP12.45□□□□□ -0.42
CPSF3-204ENST00000489403 TRAFD1O14545 582 aaPredicted RBP12.45□□□□□ -0.42
CPSF3-204ENST00000489403 ATMINO43313 823 aaPredicted RBP12.45□□□□□ -0.42
CPSF3-204ENST00000489403 NOBOXO60393 691 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 GLB1P16278 677 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 ERCC2P18074 760 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 PSMA2P25787 234 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 MYL5Q02045 173 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 BCL2L1Q07817 233 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 SRSF6Q13247 344 aaKnown RBP12.45□□□□□ -0.42
CPSF3-204ENST00000489403 MAMLD1Q13495 774 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 TGIF1Q15583 401 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 OGFOD3Q6PK18 319 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 ARHGAP36Q6ZRI8 547 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 RFX8Q6ZV50 586 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 CYP4V2Q6ZWL3 525 aaPredicted RBP12.45□□□□□ -0.42
CPSF3-204ENST00000489403 DPPA4Q7L190 304 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 APTXQ7Z2E3 356 aaKnown RBP12.45□□□□□ -0.42
CPSF3-204ENST00000489403 TAF8Q7Z7C8 310 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 JAMLQ86YT9 394 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 PELI3Q8N2H9 469 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 NPWQ8N729 165 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 ANKRD20A12PQ8NF67 263 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 CCL4L1Q8NHW4 92 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 MED8Q96G25 268 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 NSMCE3Q96MG7 304 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 KCTD15Q96SI1 283 aaPredicted RBP12.45□□□□□ -0.42
CPSF3-204ENST00000489403 SYT11Q9BT88 431 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 LGR4Q9BXB1 951 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 STRADBQ9C0K7 418 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 TMEM168Q9H0V1 697 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 SP110Q9HB58 689 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 WDR70Q9NW82 654 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 PISDQ9UG56 409 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 PCSK1NQ9UHG2 260 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 LOXL2Q9Y4K0 774 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 COL6A6A6NMZ7 2263 aa12.45□□□□□ -0.42
CPSF3-204ENST00000489403 CFAP46Q8IYW2 2715 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 LRRC10BA6NIK2 292 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 TMCO5BA8MYB1 307 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 B4DGG1 531 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 EIF3CLB5ME19 914 aaKnown RBP12.44□□□□□ -0.42
CPSF3-204ENST00000489403 DFFAO00273 331 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 HOXC4P09017 264 aaPredicted RBP12.44□□□□□ -0.42
CPSF3-204ENST00000489403 JMJD7P0C870 316 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 KRT10P13645 584 aa12.44□□□□□ -0.42
CPSF3-204ENST00000489403 PNLIPP16233 465 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms