RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 RMDN1Q96DB5 314 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 SGSM3Q96HU1 749 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 CPNE1Q99829 537 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 HEPHQ9BQS7 1158 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 OSBPL1AQ9BXW6 950 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 SUV39H2Q9H5I1 410 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 NLE1Q9NVX2 485 aaPredicted RBP11.54□□□□□ -0.56
C9orf3-220ENST00000489318 NSMCE4AQ9NXX6 385 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 SENP1Q9P0U3 644 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 ZFATQ9P243 1243 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 SLC2A6Q9UGQ3 507 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 GGT7Q9UJ14 662 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 HCN2Q9UL51 889 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 NOVA2Q9UNW9 492 aaKnown RBP11.54□□□□□ -0.56
C9orf3-220ENST00000489318 PCDHB9Q9Y5E1 797 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 PLXNA2O75051 1894 aa11.54□□□□□ -0.56
C9orf3-220ENST00000489318 IQANK1A0A1B0GTG1 560 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 EDDM13A0A1B0GTR0 161 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 H7C0S8 307 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 PIAS1O75925 651 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 APODP05090 189 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 ERVK-10P10266 1014 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 CTHP32929 405 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 GP5P40197 560 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 CSE1LP55060 971 aaKnown RBP11.53□□□□□ -0.56
C9orf3-220ENST00000489318 ZNF234Q14588 700 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 TMED2Q15363 201 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 CNGA3Q16281 694 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 CDKN3Q16667 212 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 ACCSLQ4AC99 568 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 TEDDM1Q5T9Z0 273 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 KCTD16Q68DU8 428 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 BRAT1Q6PJG6 821 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 PACS1Q6VY07 963 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 GLT6D1Q7Z4J2 308 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 EXOC3L1Q86VI1 746 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 SFTPA1Q8IWL2 248 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 CTAGE3PQ8IX95 158 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 CSGALNACT1Q8TDX6 532 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 SCG3Q8WXD2 468 aaKnown RBP11.53□□□□□ -0.56
C9orf3-220ENST00000489318 ISL2Q96A47 359 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 ZBTB9Q96C00 473 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 MSANTD3Q96H12 275 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 FAM167BQ9BTA0 163 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 CENPHQ9H3R5 247 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 MFSD1Q9H3U5 465 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 ZDHHC6Q9H6R6 413 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 KCNK12Q9HB15 430 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 SSU72Q9NP77 194 aaKnown RBP11.53□□□□□ -0.56
C9orf3-220ENST00000489318 C20orf96Q9NUD7 363 aaPredicted RBP11.53□□□□□ -0.56
C9orf3-220ENST00000489318 DKK3Q9UBP4 350 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 PHTF1Q9UMS5 762 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 PLA2G4CQ9UP65 541 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 ZNF711Q9Y462 761 aa11.53□□□□□ -0.56
C9orf3-220ENST00000489318 HMX2A2RU54 273 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 SPECC1L-ADORA2AF8WAN1 911 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 AURKAO14965 403 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 UGT1A9O60656 530 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 RPP40O75818 363 aaKnown RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 KRT37O76014 449 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 KRT38O76015 456 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 VAPBO95292 243 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 UGT2B4P06133 528 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 CTSLP07711 333 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 BMP1P13497 986 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 NR1D1P20393 614 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 SP100P23497 879 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 SLC8A1P32418 973 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 HMGCLP35914 325 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 IL12RB1P42701 662 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 TNFRSF4P43489 277 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 SOX9P48436 509 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 ARSDP51689 593 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 LIMK2P53671 638 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 EPHB1P54762 984 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 MAGOHP61326 146 aaKnown RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 DNAJC3Q13217 504 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 ELAVL3Q14576 367 aaKnown RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 SKIDA1Q1XH10 827 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 PUS10Q3MIT2 529 aaKnown RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 HSP90AA5PQ58FG0 334 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 GDPD4Q6W3E5 623 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 KDM7AQ6ZMT4 941 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 KIAA0408Q6ZU52 694 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 NUDT18Q6ZVK8 323 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 TAOK1Q7L7X3 1001 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 RALGPS2Q86X27 583 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 RYBPQ8N488 228 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 SLC44A3Q8N4M1 653 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 GPR150Q8NGU9 434 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 TTC8Q8TAM2 541 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 CALML6Q8TD86 181 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 PDCD6IPQ8WUM4 868 aaKnown RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 EZH1Q92800 747 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 MTBPQ96DY7 904 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 SCRN2Q96FV2 425 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 DNAJC1Q96KC8 554 aaKnown RBP11.52□□□□□ -0.57
C9orf3-220ENST00000489318 RBBP8Q99708 897 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 P2RY13Q9BPV8 354 aa11.52□□□□□ -0.57
C9orf3-220ENST00000489318 C8orf33Q9H7E9 229 aaPredicted RBP11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms