RNA–Protein interactions for RNA: ENST00000481335.5

SQSTM1-207, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 562 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-207ENST00000481335 SERPING1P05155 500 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 CTSEP14091 401 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 TSHRP16473 764 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 PTMSP20962 102 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 PBX1P40424 430 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 RGRP47804 291 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 UCNP55089 124 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 ADKP55263 362 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 CDH6P55285 790 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 GABREP78334 506 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 ZBED6P86452 979 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 ZNF235Q14590 738 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 ISXQ2M1V0 245 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 GUSBP11Q6P575 273 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 RBM44Q6ZP01 1051 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 EFL1Q7Z2Z2 1120 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 POLNQ7Z5Q5 900 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 ZSWIM9Q86XI8 627 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 SLC35F3Q8IY50 421 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 LSM14AQ8ND56 463 aaKnown RBP12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 NSMCE1Q8WV22 266 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 WDR92Q96MX6 357 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 UBL7Q96S82 380 aaPredicted RBP12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 MGME1Q9BQP7 344 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 TRIM7Q9C029 511 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 THSD1Q9NS62 852 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 KLQ9UEF7 1012 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 PNMA8BQ9ULN7 279 aaPredicted RBP12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 PCDHB1Q9Y5F3 818 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 PCDHGA8Q9Y5G5 932 aa12.2□□□□□ -0.46
SQSTM1-207ENST00000481335 UNC13CQ8NB66 2214 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 CPED1A4D0V7 1026 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 TK2O00142 265 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 PSMD11O00231 422 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 YY2O15391 372 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 USP12O75317 370 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 RECQL5O94762 991 aaPredicted RBP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 ITIH2P19823 946 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 CR2P20023 1033 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 TGM2P21980 687 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 IL1R2P27930 398 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 TRIM23P36406 574 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 SCNN1BP51168 640 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 UBASH3AP57075 661 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 SRP54P61011 504 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 FANCCQ00597 558 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 RALGDSQ12967 914 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 EIF3IQ13347 325 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 COL9A2Q14055 689 aaPredicted RBP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 INPP5AQ14642 412 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 TSR1Q2NL82 804 aaKnown RBP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 ALG11Q2TAA5 492 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 ENPP7Q6UWV6 458 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 LIPIQ6XZB0 460 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 ATPAF2Q8N5M1 289 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 PAF1Q8N7H5 531 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 NETO2Q8NC67 525 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 CCDC97Q96F63 343 aaPredicted RBP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 HIC2Q96JB3 615 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 CSPG4P5Q96PW8 444 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 NUDCD1Q96RS6 583 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 RBM15Q96T37 977 aaKnown RBP eCLIP12.19□□□□□ -0.461e-7■■□□□ 13.5
SQSTM1-207ENST00000481335 CLPBQ9H078 707 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 TCEAL2Q9H3H9 227 aaPredicted RBP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 PRORYQ9H606 182 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 HAUS2Q9NVX0 235 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 MYO1AQ9UBC5 1043 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 PADI4Q9UM07 663 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 CAPN11Q9UMQ6 739 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 COQ6Q9Y2Z9 468 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 KIF26BQ2KJY2 2108 aa12.19□□□□□ -0.46
SQSTM1-207ENST00000481335 TEX51A0A1B0GUA7 166 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 GOLGA6L19H0YKK7 550 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 TMX2-CTNND1H3BSU7 103 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 NTN3O00634 580 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 MUSKO15146 869 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 MAFKO60675 156 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 PEX11BO96011 259 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 TNFP01375 233 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 PCCBP05166 539 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 CYP1A2P05177 515 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 TPM3P06753 285 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 RARAP10276 462 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 CYP2A6P11509 494 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 SKILP12757 684 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 PNLIPP16233 465 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 TEAD1P28347 426 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 SLC25A11Q02978 314 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 SLC10A7Q0GE19 358 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 C1orf61Q13536 156 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 SPIDRQ14159 915 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 HADHQ16836 314 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 SMTNL2Q2TAL5 461 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 SOWAHCQ53LP3 525 aaPredicted RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 ARHGAP36Q6ZRI8 547 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 HID1Q8IV36 788 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 RAVER1Q8IY67 606 aaKnown RBP12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 OR56A4Q8NGH8 313 aa12.18□□□□□ -0.46
SQSTM1-207ENST00000481335 PCDH19Q8TAB3 1148 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms